Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: Next Generation Sequencing Comparison of Wild Type and Whsc1-/- BM sorted proB Cell Transcriptomes

PROVIDER: PRJNA349258 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4434760_1.fastq.gz	Fastqsanger.gz
	SRR4434760_2.fastq.gz	Fastqsanger.gz
	SRR4434761_1.fastq.gz	Fastqsanger.gz
	SRR4434761_2.fastq.gz	Fastqsanger.gz
	SRR4434762_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Mus musculus

Project description:Next Generation Sequencing Comparison of Wild Type and Whsc1-/- Activated B-cell Transcriptomes

| PRJNA335426 | ENA

Next Generation Sequencing Comparison of Wild Type and Whsc1-/- BM sorted proB Cell Transcriptomes

Project description:Whsc1 gene codes for a SET domain-containing H3K36 dimethylase, whose activity has been suggested, in ex vivo cell culture experiments, to control many aspects of DNA and RNA processing (replication, repair, transcription, etc). Its precise function in vivo is still unclear. Here, we use RNA-seq transcriptome analysis to study the changes in gene expression in the absence of Whsc1 in sorted Bone Marrow proB cells. Our results show that, in the experimental system used, loss of Whsc1 caused massive changes in genes affecting many fundamental cellular processes and also severly interefering with B cell fate specification and commitment

2017-05-23 | GSE88970 | GEO

Next Generation Sequencing of Wild Type and OsMIR393b Transcriptomes

Project description:Next Generation Sequencing of Wild Type and OsMIR393b Transcriptomes

| PRJNA744246 | ENA

Analysis of Wild Type and Whsc1-/- small intestine Transcriptomes

Project description:Analysis of Wild Type and Whsc1-/- small intestine Transcriptomes

| PRJNA743911 | ENA

Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes

Project description:Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes

2021-12-31 | GSE183118 | GEO

Comparison of Transcriptomes of Wild Type and aan1∆ cells by Next Generation RNA Sequencing

Project description:Comparison of Transcriptomes of Wild Type and aan1∆ cells by Next Generation RNA Sequencing

| PRJNA728644 | ENA

Effects of pE66L missing on ASFV

Project description:Identify the function of pE66L Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Nrl-- Retinal Transcriptomes

2020-09-23 | GSE158335 | GEO

Comparison of Transcriptomes of Wild Type and Paraquat-treated cells by Next Generation RNA Sequencing

Project description:Comparison of Transcriptomes of Wild Type and Paraquat-treated cells by Next Generation RNA Sequencing

| PRJNA633620 | ENA

Next Generation Sequencing of Wild Type and Oslec1-1 Transcriptomes

Project description:Next Generation Sequencing of Wild Type and Oslec1-1 Transcriptomes

| PRJNA745207 | ENA

NIA15k screen. Pax5 +/+, Pax5 -/-, and Rag1-/- pro B cell lines.

Project description:The transcription factor Pax5 is essential for B cell commitment in the mouse, where it represses lineage-inappropriate gene expression, while simultaneously activating the B cell gene expression program. We have performed a global gene expression screen of wild type and Pax5-deficient pro-B cells in an attempt to identify the crucial Pax5 targets in early B-lymphopoiesis. We have also included Rag1-/- and wild type (+/+) proB cells starved of the cytokine IL-7 for 4 hours as controls. Rag1-/- proB cells are incapable of further differentiation due to an absence of immunoglobulin recombination and IL-7 is the major cytokine regulating proB cell growth. Keywords: comparison of genetically modified cell-lines

2007-10-26 | GSE9345 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data