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Hycleus cichorii isolate:collecting at field of Luodian, Guizhou Province of China

ABSTRACT: Hycleus cichorii mRNA-seq

PROVIDER: PRJNA349772 | ENA |

REPOSITORIES: ENA

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Hycleus cichorii isolate:collecting at field of Luodian, Guizhou Province of China

Project description:Hycleus cichorii mRNA-seq

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Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus.

Project description:Background:Commonly known as blister beetles or Spanish fly, there are more than 1500 species in the Meloidae family (Hexapoda: Coleoptera: Tenebrionoidea) that produce the potent defensive blistering agent cantharidin. Cantharidin and its derivatives have been used to treat cancers such as liver, stomach, lung, and esophageal cancers. Hycleus cichorii and Hycleus phaleratus are the most commercially important blister beetles in China due to their ability to biosynthesize this potent vesicant. However, there is a lack of genome reference, which has hindered development of studies on the biosynthesis of cantharidin and a better understanding of its biology and pharmacology. Results:We report 2 draft genomes and quantified gene sets for the blister beetles H. cichorii and H. phaleratus, 2 complex genomes with >72% repeats and approximately 1% heterozygosity, using Illumina sequencing data. An integrated assembly pipeline was performed for assembly, and most of the coding regions were obtained. Benchmarking universal single-copy orthologs (BUSCO) assessment showed that our assembly obtained more than 98% of the Endopterygota universal single-copy orthologs. Comparison analysis showed that the completeness of coding genes in our assembly was comparable to other beetle genomes such as Dendroctonus ponderosae and Agrilus planipennis. Gene annotation yielded 13?813 and 13?725 protein-coding genes in H. cichorii and H. phaleratus, of which approximately 89% were functionally annotated. BUSCO assessment showed that approximately 86% and 84% of the Endopterygota universal single-copy orthologs were annotated completely in these 2 gene sets, whose completeness is comparable to that of D. ponderosae and A. planipennis. Conclusions:Assembly of both blister beetle genomes provides a valuable resource for future biosynthesis of cantharidin and comparative genomic studies of blister beetles and other beetles.

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The complete mitochondrial genomes of <i>hycleus cichorii</i> and <i>hycleus phaleratus</i> (Coleoptera: Meloidae).

Project description:The Hycleus cichorii and Hycleus phaleratus are two species of medicinal meloids widely distributed in southwest of China. We sequenced an annotated the complete mitochondrial genomes of H. cichorii and H. phaleratus, and the mitogenomes are 15,847 and 16,004 bp in length, respectively. Every mitochondrial genome encodes 13 proteins, 2 ribosomal RNAs, 22 tRNAs, and a control region with the identical arrangement to other beetles. The preliminary phylogenetic analysis with mitochondrial genomes of nine meloid species further confirmed the status of these two species.

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Project description:Pseudomonas cichorii JBC1 was cultured in LB media till it reached exponential phase and the bacterial cells were collected and resuspended in minimal media and treated under green light and dark condition for 12 hours at 30°C. After treatment, the RNA from each sample was collected and sequenced.

2017-02-01 | GSE86142 | GEO

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