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Salmonella bongori

ABSTRACT: Reptile-associated bacterium

PROVIDER: PRJNA35217 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	AAVUUH01.dat.gz	Other
	AAVUUH01.fasta.gz	Fasta.gz
	AAVUUH01.master.dat	Other
	AAVUUI01.dat.gz	Other

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Salmonella bongori NCTC 12419

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Project description:Reptile-associated Salmonella

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Genomic comparison of Salmonella enterica serovars and Salmonella bongori

Project description:This experiment set includes 64 arrays representing 26 serovars and strains of Salmonella spp. including many representatives of subspecies I, Arizona from subsp. IIIa, and S. bongori from subsp. V. The genomic DNA from all strains were labeled with Cy5 and hybridized against an equal amount (1.5 ug) of S. typhimurium SL1344 reference genomic DNA that was labeled with Cy3, all on an S. typhimurium SL1344 spotted DNA microarray. Most of the arrays are present in triplicate to account for variability in probe generation, hybridization, and slide quality. Several are represented in duplicate, and a few without any replicates. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: Logical Set

2005-11-04 | GSE3564 | GEO

Genome Sequence of Salmonella bongori Strain N268-08 [corrected].

Project description:Salmonella bongori is a close relative of the highly virulent members of S. enterica subspecies enterica, encompassing more than 2,500 serovars, most of which cause human salmonellosis, one of the leading food-borne illnesses. S. bongori is only very rarely implicated in infections. We here present the sequence of a clinical isolate from Switzerland, S. bongori strain N268-08.

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Salmonella bongori provides insights into the evolution of the Salmonellae.

Project description:The genus Salmonella contains two species, S. bongori and S. enterica. Compared to the well-studied S. enterica there is a marked lack of information regarding the genetic makeup and diversity of S. bongori. S. bongori has been found predominantly associated with cold-blooded animals, but it can infect humans. To define the phylogeny of this species, and compare it to S. enterica, we have sequenced 28 isolates representing most of the known diversity of S. bongori. This cross-species analysis allowed us to confidently differentiate ancestral functions from those acquired following speciation, which include both metabolic and virulence-associated capacities. We show that, although S. bongori inherited a basic set of Salmonella common virulence functions, it has subsequently elaborated on this in a different direction to S. enterica. It is an established feature of S. enterica evolution that the acquisition of the type III secretion systems (T3SS-1 and T3SS-2) has been followed by the sequential acquisition of genes encoding secreted targets, termed effectors proteins. We show that this is also true of S. bongori, which has acquired an array of novel effector proteins (sboA-L). All but two of these effectors have no significant S. enterica homologues and instead are highly similar to those found in enteropathogenic Escherichia coli (EPEC). Remarkably, SboH is found to be a chimeric effector protein, encoded by a fusion of the T3SS-1 effector gene sopA and a gene highly similar to the EPEC effector nleH from enteropathogenic E. coli. We demonstrate that representatives of these new effectors are translocated and that SboH, similarly to NleH, blocks intrinsic apoptotic pathways while being targeted to the mitochondria by the SopA part of the fusion. This work suggests that S. bongori has inherited the ancestral Salmonella virulence gene set, but has adapted by incorporating virulence determinants that resemble those employed by EPEC.

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Salmonella bongori

Project description:Whole genome sequencing of Salmonella enterica subsp. bongori, an opportunistic pathogen

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Salmonella bongori comparative genome hybridization

Project description:Comparative genome hybridization (CGH) of 35 Salmonella bongori strains and 16 Salmonella spp strains belonging to SarC collection

2010-12-31 | E-TABM-931 | biostudies-arrayexpress

Genomic comparison of Salmonella enterica serovars and Salmonella bongori

2005-11-03 | E-GEOD-3564 | biostudies-arrayexpress

Salmonella bongori CFSAN000509

Project description:Foodborne Pathogen Survey

| PRJNA191649 | ENA