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Komagataella pastoris

ABSTRACT: ChIP-Seq of constitutively expressed Ndt80-Myc in P. pastoris

PROVIDER: PRJNA355300 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR5061370.fastq.gz	Fastqsanger.gz
	SRR5061371.fastq.gz	Fastqsanger.gz
	SRR5061368.fastq.gz	Fastqsanger.gz
	SRR5061369.fastq.gz	Fastqsanger.gz

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ChIP-Seq of constitutively expressed Ndt80-Myc in P. pastoris

Project description:The purpose of this experiment was to identify the genes bound by Ndt80 in P. pastoris when constitutively expressed. Ndt80 was tagged with c-myc, the native Ndt80 promoter was replaced with the E. gossypii Tef1 promoter and the protein was immunoprecipitated with a c-myc antibody. Cells were grown unti log-phase in YPD. Each experiment was repeated twice and sequenced on an Illumina HiSeq 2500.

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Project description:The purpose of this experiment was to identify the genes bound by Ndt80 in S. cerevisiae when constitutively expressed, for the native Ndt80 as well as a heterologous Ndt80 from Pichia pastoris. For the ChIPs on the native Ndt80s, Ndt80 was tagged with c-myc; for the heterologous ChIP P. pastoris Ndt80 was integrated into the S. cerevisiae genome and tagged with c-myc. In both cases, the native Ndt80 promoter was also replaced with an A. gossypii Gal1 promoter and the protein was immunoprecipitated with a c-myc antibody. Cells were grown overnight in SRaffinose until log-phase, then in SRaffinose + 1.7% Galactose for 5 hours. Each experiment was repeated twice and sequenced on an Illumina HiSeq 4000.

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Project description:Komagataella pastoris Raw sequence reads