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Comparative analysis the transcriptomes of the hyperaccumulator Sedum plumbizincicola and the non-hyperaccumulator Sedum alfredii (NHE)

ABSTRACT: Comparative analysis the transcriptomes of the hyperaccumulator Sedum plumbizincicola and the non-hyperaccumulator Sedum alfredii (NHE)

OTHER RELATED OMICS DATASETS IN: GSE92529

PROVIDER: PRJNA357920 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5118120_1.fastq.gz	Fastqsanger.gz
	SRR5118120_2.fastq.gz	Fastqsanger.gz
	SRR5118121_1.fastq.gz	Fastqsanger.gz
	SRR5118121_2.fastq.gz	Fastqsanger.gz
	SRR5118122_1.fastq.gz	Fastqsanger.gz

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Comparative analysis the transcriptomes of the hyperaccumulator Sedum plumbizincicola and the non-hyperaccumulator Sedum alfredii (NHE)

Project description:The aim of this study is to investigate whether the known mechanisms of hyperaccumulaion in Brassicaceae hyperaccumulators (Arabidopsis halleri and Noccaea caerulescens) are conserved among different hyperaccumulating species or if there exist unknown mechanismsin other metal hyperaccumulating species.The comparison of transcriptomes between hyperaccumulator Sedum plumbizincicola and non-hyperaccumulator S. alfredii (NHE) was performed by taking advantage of next-generation sequencing.The data suggested that increased active uptake, long-distance transport and efficient chelation of heavy metals might represent common mechanisms occurred in various hyperaccumulators. Moreover, we found that those genes showing constitutively higher expression in S. plumbizincicola shoots are significantly enriched in processes related to cell wall metabolism, including biosynthesis/modification of cellulose, lignin, pectin, glucan, and other cell wall related components.

2017-10-01 | GSE92529 | GEO

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Transcription profiling by high throughput sequencing of heavy metal hyperaccumulator Sedum alfredii Hance (Crassulaceae).

Project description:RNA-seq was used to unveil the molecular mechanisms of Cd tolereance in Sedum alfredii Hance shoots Here we are submitting the expression abundance of each contig in two treatments (CK vs Cd) with three biological replicates. Sequences for the contigs were submitted to EMBL-Bank.

2014-01-13 | E-MTAB-934 | biostudies-arrayexpress

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Project description:Sedum plumbizincicola Raw sequence reads

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Tanscriptional profiling of heavy metal hyperaccumulator Sedum alfredii Hance (Crassulaceae) through RNA sequencing (RNA-seq) reveals molecular mechanisms of cadmium tolerance in plants

Project description:RNA-seq was used to unveil the molelcualr mechanisms of Cd tolereance in Sedum alfredii Hance shoots

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Quantitative proteome analysis reveals changes of membrane proteins in Sedum plumbizincicola under cadmium stress

Project description:Sedum plumbizincicola is an herbaceous species tolerant of excessive cadmium accumulation in above-ground tissues. The implications of membrane proteins, especially integrative membrane proteins such as transporters, in Cd detoxification in plants have received attention in recent years, but a comprehensive profiling of Cd-responsive membrane proteins from Cd hyperaccumulator plants is lacking. In this study, the membrane proteins of root, stem, and leaf tissues of S. plumbizincicola seedlings treated with Cd solution for 0, 1 or 3 days were analyzed by Tandem Mass Tag (TMT) labeling-based proteome quantification. Total 3353 proteins with predicted transmembrane helices were identified and quantified in at least one tissue group

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