Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

16s rRNA sequence from mice commensal

ABSTRACT: Nlrp12-defecient hematopoietic cells caused intestinal dysbiosis via increased proinflammatory cytokines

PROVIDER: PRJNA358044 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

16s rRNA sequence from mice commensal

Project description:Restoring dysbiotic microbiome harbored in Nlrp12-defecient mice by introducing fecal transplantation

| PRJNA358042 | ENA

16s rRNA sequence from mice commensal

Project description:16s rRNA sequencing of fecal DNA from wild type and Nlrp12-deficient mice

| PRJNA358041 | ENA

16S rRNA gene sequence data revealed effects of natural phenylethanoids on gut microbiota.

Project description:The aim of study is to evaluate whether salidroside (S), tyrosol (T) and hydroxytyrosol (H) which are dietary phenylethanoids of natural origins have an influence on reversing gut dysbiosis induced by metabolic syndrome (MetS) mice. C57 BL/6J female mice induced by high fructose diet were established. All mice were adapted to the environment for 7 days with normal diet and sterile drinking water (DW), and randomly divided into 6 groups. Mice in the ND group are fed with ND and treated with normal saline. Other groups were fed with high fructose (HFru) by administration of normal saline, salidroside (S), tyrosol (T) or hydroxytyrosol (H) for 12 weeks by intragastric gavage. Fresh feces from each mouse were collected one days before the end of the experiment and temporarily placed in sterile tubules, and then snap-frozen in liquid nitrogen. Total DNA from stool bacteria was extracted using QIAamp DNA stool mini kit from Qiagen (Germantown, MD, USA) according to the manufacturer’s instructions. Illumina HiSeq sequencing analysis of the DNA samples.16S rRNA gene sequence data further revealed that S, T and H could enhance the diversity of gut microbiota. In general, the abundance of Shigella, Acinetobacter, Lactobacillus, Staphylococcus and Sporosarcina had changed significantly. These findings suggest that S, T and H probably suppress lipid accumulation and to hepatoprotective effect and improve intestinal microflora disorders to attenuate metabolic syndromes.

2022-01-24 | GSE194127 | GEO

16S rRNA sequence

Project description:16S rRNA sequence Raw sequence reads

| PRJNA633003 | ENA

16S rRNA Sequence

Project description:16S rRNA metagenome samples

| PRJNA724663 | ENA

16S rRNA sequence

Project description:16S rRNA sequence Raw sequence reads

| PRJNA808633 | ENA

Ants of French Guiana: 16S rRNA sequence dataset.

Project description:This dataset represents a reference library of DNA sequences for ants from French Guiana. A total of 3931 new sequences from the 16S rRNA gene has been generated. The reference library covers 344 species distributed in 57 genera. Overall, 3920 sequences have been assigned at the species level and 11 at the genus level. All these sequences were submitted to DDBJ/EMBL/GenBank databases in the Bioproject: PRJNA779056: 16S French Guiana Ants (Hymenoptera: Formicidae), sequence identifier KFFS00000000.

| S-EPMC10848834 | biostudies-literature

Identification of Comamonas species using 16S rRNA gene sequence.

Project description:A bacterial strain Bz02 was isolated from a water sample collected from river Gomti at the Indian city of Lucknow. We characterized the strain using 16S rRNA sequence. Phylogenetic analysis showed that the strain formed a monophyletic clade with members of the genus Comamonas. The closest phylogenetic relative was Comamonas testosteroni with 95% 16S rRNA gene sequence similarity. It is proposed that the identified strain Bz02 be assigned as the type strain of a species of the genus Comamonas (Comamonas sp Bz02) based on 16S rRNA gene sequence search in Ribosomal Database Project, small subunit rRNA and large subunit rRNA databases together with the phylogenetic tree analysis. The sequence is deposted in GenBank with the accession number FJ211417.

| S-EPMC2732032 | biostudies-literature

16S rRNA sequence diversity in Mycobacterium celatum strains caused by presence of two different copies of 16S rRNA gene.

Project description:Direct sequencing of the 16S rRNA gene (16S rDNA) of Mycobacterium celatum isolates showed ambiguities, suggesting heterogeneity. Cloned 16S rDNA yielded two copies of the gene, which differed by insertion of a thymine at position 214 and by additional mismatches. Restriction fragment length polymorphism analysis confirmed the presence of two copies of 16S rDNA within the bacterial chromosome.

| S-EPMC104915 | biostudies-literature

asthma 16S rRNA sequence

Project description:asthma 16S rRNA sequence Raw sequence reads

| PRJNA808442 | ENA