Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Parvibaculum lavamentivorans

ABSTRACT: Parvibaculum lavamentivorans overview

PROVIDER: PRJNA35965 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR253117.fastq.gz	Fastqsanger.gz
	SRR9434410.fastq.gz	Fastqsanger.gz
	SRR9434420.fastq.gz	Fastqsanger.gz
	SRR9434430.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

Parvibaculum

Project description:Parvibaculum sp. overview

| PRJNA587193 | ENA

Parvibaculum sp. JGI_KA33_D01_009

Project description:Parvibaculum sp. JGI_KA33_D01_009 Genome sequencing

| PRJNA585546 | ENA

Parvibaculum sedimenti strain:HXT-9

Project description:Parvibaculum sedimenti strain:HXT-9 Genome sequencing and assembly

| PRJNA564410 | ENA

Parvibaculum indicum strain:DSM 25305 | isolate:DSM 25305

Project description:Parvibaculum indicum DSM 25305 genome sequencing

| PRJNA546779 | ENA

Parvibaculum lavamentivorans DS-1T degrades centrally substituted congeners of commercial linear alkylbenzenesulfonate to sulfophenyl carboxylates and sulfophenyl dicarboxylates.

Project description:Commercial linear alkylbenzenesulfonate (LAS) contains 20 congeners of linear alkanes (C(10) to C(13)) substituted subterminally with the 4-sulfophenyl moiety in any position from lateral to central. Parvibaculum lavamentivorans DS-1(T) degrades each of eight laterally substituted congeners [e.g., 2-(4-sulfophenyl)decane (2-C10-LAS); herein, compounds are named systematically by chain length (e.g., C(10)) and by the position of the substituent on the chain (e.g., position 2)] to a major sulfophenyl carboxylate [SPC; here 3-(4-sulfophenyl)butyrate (3-C4-SPC)] and two minor products, namely, the alpha,beta-unsaturated SPC (SPC-2H, here 3-C4-SPC-2H) and the SPC+2C (here 5-C6-SPC) species (D. Schleheck, T. P. Knepper, K. Fischer, and A. M. Cook, Appl. Environ. Microbiol. 70:4053-4063). The degradation of centrally substituted congeners by strain DS-1 was examined in this work. 5-C10-LAS yielded not only the predicted 4-C8-SPC, 4-C8-SPC-2H, and 6-C10-SPC (about 70% of products) but also sulfophenyl dicarboxylates (SPdC), i.e., C6-, C8-, and C10-SPdC. These were identified by electrospray ionization-mass spectrometry (ESI-MS) after separation by high-pressure liquid chromatography (HPLC). ESI ion-trap MS and ESI-time of flight-MS were used to confirm the identities of key intermediates. Different mixtures of congeners obtained by separation of commercial LAS by HPLC were degraded, and the degradative products were compared. If a congener carried the sulfophenyl substituent on the 5, 6, or 7 position, SPdCs were formed as well as SPC, SPC-2H, and SPC+2C, whereas the substituent on the 2, 3, or 4 position yielded only SPC, SPC-2H, and SPC+2C. Some 50 products were generated from the 20 LAS congeners: 11 major SPCs, each with an SPC-2H and an SPC+2C (i.e., 33 SPC and SPC-2H species), and about 17 SPdC species. A large array of compounds, many in low quantities, is thus generated by P. lavamentivorans DS-1 during the degradation of commercial LAS.

| S-EPMC1951025 | biostudies-literature

Parvibaculum lavamentivorans DS-1

Project description:Surfactant degrading bacterium

| PRJNA17639 | ENA

uncultured bacterium strain:JGI SC39-H5

Project description:Uncultured parvibaculum JGI SC39-H5 genome sequencing

| PRJNA410318 | ENA

uncultured bacterium strain:JGI SC39-J11

Project description:Uncultured parvibaculum JGI SC39-J11 genome sequencing

| PRJNA410319 | ENA

Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Tbx6b in the ascidian early gastrula embryo.