Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Saccharomyces cerevisiae

ABSTRACT: Histone H3Lys4 trimethylation in budding yeast S. cerevisiae for wild type and cnc1Djhd2D yeast mutants

PROVIDER: PRJNA361405 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5177910.fastq.gz	Fastqsanger.gz
	SRR5177920.fastq.gz	Fastqsanger.gz
	SRR5177911.fastq.gz	Fastqsanger.gz
	SRR5177921.fastq.gz	Fastqsanger.gz
	SRR5177912.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Histone H3Lys4 trimethylation in budding yeast S. cerevisiae for wild type and cnc1Djhd2D yeast mutants

Project description:In this study, we measured histone H3Lys4 trimethylation in budding yeast S. cerevisiae for wild type and cnc1Djhd2D yeast mutants. These experiments were performed for yeast cultured to mid-logarithmic phase in non-fermentable carbon.

2017-03-01 | GSE93641 | GEO

Saccharomyces cerevisiae

Project description:Histone H3 K36 trimethylation in wild-type BY4741 yeast strains

| PRJNA158265 | ENA

The phosphoproteome response to dithiolthreitol in Saccharomyces cerevisiae

Project description:The project quantified the yeast phosphoproteome before and at various times after dithiolthreitol (DTT) in budding yeast, focusing on wild-type cells and mutants laking the Ire1 and Mkk1/Mkk2 kinases.

2020-07-03 | PXD017396 | Pride

Chromatin recruitment of Rad6 determines H3K4me3 in Saccharomyces cerevisiae

Project description:Project abstract : The trimethylation of histone H3 lysine 4 (H3K4me3) is a crucial factor in defining the promoter regions of active genes in all eukaryotes ranging from Saccharomyces cerevisiae (yeast) to humans. In budding yeast, this trimethylation process facilitated by the Set1 complex results in H3K4me3 requiring a prior mono-ubiquitination at the histone H2BK123 residue (H2Bub) by E2 enzyme Rad6 and E3 enzyme Bre1. A previous in vitro study suggested that ubiquitinated H2B directly facilitates H3K4me3. However, even low levels of global H2Bub is sufficient for the required H3K4me3 in yeast cells, thereby indicating that other factors resulting in the H2Bub-dependent H3K4me3 remain unknown. This study revealed the high level of correlation of H3K4me3 with chromatin recruitment of Rad6 at the genome-wide level. Rad6 is confirmd to interact and co-localize with Swd2/Cps35, a key factor for the H2Bub-dependent H3K4me3 in genes with high levels of H3K4me3 and intronic genes rather than non-intronic genes. This study therefore provides a mechanistic insight of the H2Bub-Rad6- Swd2/Cps35-H3K4me3 axis and its potential role in RNA biogenesis.

2022-06-07 | GSE146296 | GEO

Post-transcriptional control of mating-type gene expression during gametogenesis in Saccharomyces cerevisiae

Project description:Short-read RNA-seq was performed on rRNA-depleted RNA isolated from spores of the budding yeast Saccharomyces cerevisiae that were sorted by mating type.

2021-08-17 | GSE180221 | GEO

Saccharomyces cerevisiae

Project description:Yeast Histone H4 K91A versus wild type

| PRJNA91641 | ENA

Saccharomyces cerevisiae

Project description:Signature gene expression profiles for cytokinesis mutants in the budding yeast Saccharomyces cerevisiae

| PRJNA112607 | ENA

Saccharomyces cerevisiae

Project description:H3K4 trimethylation ChIP - wild-type

| PRJNA104525 | ENA

The impact of RNAi on the Saccharomyces castellii transcriptome

Project description:RNAi, a gene-silencing pathway triggered by double-stranded RNA, is conserved in diverse eukaryotic species but has been lost in the model budding yeast, Saccharomyces cerevisiae. We report that RNAi is present in other budding-yeast species, including Saccharomyces castellii and Candida albicans. These species use noncanonical Dicer proteins to generate siRNAs, which mostly correspond to transposable elements and YM-BM-4 subtelomeric repeats. In S. castellii, RNAi mutants are viable but have excess YM-BM-4 mRNA levels. In S. cerevisiae, introducing Dicer and Argonaute of S. castellii restores RNAi, and the reconstituted pathway silences endogenous retrotransposons. These results identify a novel class of Dicer proteins, bring the tool of RNAi to the study of budding yeasts, and bring the tools of budding yeast to the study of RNAi. Examine mRNA abundance in two biological replicates of wild-type (DPB005) and RNAi deletion strains (DPB007, DPB009) of S. castellii.

2009-09-10 | E-GEOD-17870 | biostudies-arrayexpress

Saccharomyces cerevisiae

Project description:Transcriptional analysis of wild-type budding yeast microcolonies encapsulated in alginate particles

| PRJNA292921 | ENA