Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Potamopyrgus antipodarum

ABSTRACT: Role of epigenetics in adaptive evolution of an asexual snail (Lake Lytle)

PROVIDER: PRJNA362574 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5189030_1.fastq.gz	Fastqsanger.gz
	SRR5189030_2.fastq.gz	Fastqsanger.gz
	SRR5189025_1.fastq.gz	Fastqsanger.gz
	SRR5189025_2.fastq.gz	Fastqsanger.gz
	SRR5189026_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Potamopyrgus antipodarum

Project description:Role of epigenetics in adaptive evolution of an asexual snail (Lake Washington)

| PRJNA390073 | ENA

Role of epigenetics in adaptive evolution of an asexual snail (Lake Washington)

Project description:We examined adaptive morphological divergence and epigenetic variation in genetically impoverished asexual populations of a freshwater snail, Potamopyrgus antipodarum from distinct environments. These populations exhibit environment-specific adaptive divergence in shell shape and significant genome wide DNA methylation differences among differentially adapted lake and fast water flow river populations. The epigenetic variation correlated with adaptive phenotypic variation in rapidly adapting asexual animal populations. This provides one of the first examples of environmentally-driven differences in epigenetics that associates with adaptive phenotypic divergence.

2017-08-18 | GSE99911 | GEO

Role of epigenetics in adaptive evolution of an asexual snail (Lake Lytle)

2017-08-18 | GSE93836 | GEO

Role of epigenetics in adaptive evolution of an asexual snail

Project description:Role of epigenetics in adaptive evolution of an asexual snail

| PRJNA390070 | ENA

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum ovary RNA-seq

| PRJNA423241 | ENA

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum Transcriptome or Gene expression

| PRJNA381223 | ENA

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum Transcriptome or Gene expression

| PRJNA133059 | ENA

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum Raw sequence reads

| PRJNA430422 | ENA

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum overview

| PRJNA158191 | ENA

Regional Epigenetic Variation in Asexual Snail Populations among Urban and Rural Lakes

Project description:Epigenetic variation has the potential to control environmentally dependent development and contribute to phenotypic responses to local environments. Environmental epigenetic studies of sexual organisms confirm the responsiveness of epigenetic variation, which should be even more important when genetic variation is lacking. A previous study of an asexual snail, Potamopyrgus antipodarum, demonstrated that different populations derived from a single clonal lineage differed in both shell phenotype and methylation signature when comparing lake versus river populations. Here, we examine methylation variation among lakes that differ in environmental disturbance and pollution histories. The differential DNA methylation regions (DMRs) identified among the different lake comparisons suggested a higher number of DMRs and variation between rural Lake 1 and one urban Lake 2 and between the two urban Lakes 2 and 3, but limited variation between the rural Lake 1 and urban Lake 3. DMR genomic characteristics and gene associations were investigated. Observations suggest there is no effect of geographic distance or any consistent pattern of DMRs between urban and rural lakes. Environmental factors may influence epigenetic response.

2019-09-27 | GSE133502 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data