Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Potamopyrgus antipodarum

ABSTRACT: Potamopyrgus antipodarum Transcriptome or Gene expression

PROVIDER: PRJNA381223 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5418470_1.fastq.gz	Fastqsanger.gz
	SRR5418470_2.fastq.gz	Fastqsanger.gz
	SRR5418480_1.fastq.gz	Fastqsanger.gz
	SRR5418480_2.fastq.gz	Fastqsanger.gz
	SRR5418471_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum Transcriptome or Gene expression

| PRJNA133059 | ENA

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum overview

| PRJNA158191 | ENA

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum ovary RNA-seq

| PRJNA423241 | ENA

Potamopyrgus antipodarum

Project description:Potamopyrgus antipodarum Raw sequence reads

| PRJNA430422 | ENA

Potamopyrgus

Project description:Potamopyrgus genome project

| PRJNA717745 | ENA

Potamopyrgus estuarinus

Project description:Potamopyrgus estuarinus overview

| PRJNA196882 | ENA

Potamopyrgus antipodarum

Project description:Role of epigenetics in adaptive evolution of an asexual snail (Lake Lytle)

| PRJNA362574 | ENA

Potamopyrgus antipodarum

Project description:Role of epigenetics in adaptive evolution of an asexual snail (Lake Washington)

| PRJNA390073 | ENA

Response to phosphorus limitation varies among lake populations of the freshwater snail Potamopyrgus antipodarum.

Project description:Local adaptation--typically recognized as higher values of fitness-related traits for native vs. non-native individuals when measured in the native environment--is common in natural populations because of pervasive spatial variation in the intensity and type of natural selection. Although local adaptation has been primarily studied in the context of biotic interactions, widespread variation in abiotic characteristics of environments suggests that local adaptation in response to abiotic factors should also be common. Potamopyrgus antipodarum, a freshwater New Zealand snail that is an important model system for invasion biology and the maintenance of sexual reproduction, exhibits local adaptation to parasites and rate of water flow. As an initial step to determining whether P. antipodarum are also locally adapted to phosphorus availability, we examined whether populations differ in their responses to phosphorus limitation. We found that field-collected juvenile P. antipodarum grew at a lower rate and reached an important size threshold more slowly when fed a relatively low vs. a relatively high-phosphorus diet. We also detected significant across-population variation in individual growth rate. A marginally significant population-by-dietary phosphorus interaction along with a two-fold difference across populations in the extent of suppression of growth by low phosphorus suggests that populations of P. antipodarum may differ in their response to phosphorus limitation. Local adaptation may explain this variation, with the implication that snails from lakes with relatively low phosphorus availability should be less severely affected by phosphorus limitation than snails from lakes with higher phosphorus availability.

| S-EPMC3894190 | biostudies-literature

Distinct Bacterial Microbiomes in Sexual and Asexual Potamopyrgus antipodarum, a New Zealand Freshwater Snail.

Project description:Different reproductive strategies and the transition to asexuality can be associated with microbial symbionts. Whether such a link exists within mollusks has never been evaluated. We took the first steps towards addressing this possibility by performing pyrosequencing of bacterial 16S rRNA genes associated with Potamopyrgus antipodarum, a New Zealand freshwater snail. A diverse set of 60 tissue collections from P. antipodarum that were genetically and geographically distinct and either obligately sexual or asexual were included, which allowed us to evaluate whether reproductive mode was associated with a particular bacterial community. 2624 unique operational taxonomic units (OTU, 97% DNA similarity) were detected, which were distributed across ~30 phyla. While alpha diversity metrics varied little among individual samples, significant differences in bacterial community composition and structure were detected between sexual and asexual snails, as well as among snails from different lakes and genetic backgrounds. The mean dissimilarity of the bacterial communities between the sexual and asexual P. antipodarum was 90%, largely driven by the presence of Rickettsiales in sexual snails and Rhodobacter in asexual snails. Our study suggests that there might be a link between reproductive mode and the bacterial microbiome of P. antipodarum, though a causal connection requires additional study.

| S-EPMC5001651 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data