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Clostridium carboxidivorans

ABSTRACT: Clostridium carboxidivorans overview

PROVIDER: PRJNA36909 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	ACVI01.dat.gz	Other
	ACVI01.fasta.gz	Fasta.gz
	ACVI01.master.dat	Other
	ADEK01.dat.gz	Other

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1 - 5 of 14

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Transcriptomic analysis to analyze gene expression of bacteria corroding iron

Project description:To identify the mechanism of Microbial Influenced Corrosion (MIC) and the bacterial response toward corrosion, we conducted whole genome microarray expression profile. At log phase, the cell of Clostridium carboxidivorans using iron granule as an electron donor (corroding iron) was collected as a sample, and that of using syngas as an electron donor was collected as a control.

2017-04-04 | GSE97319 | GEO

Clostridium carboxidivorans

Project description:Transcriptomic analysis to analyze gene expression of bacteria corroding iron

| PRJNA381397 | ENA

The Restriction-Modification Systems of <i>Clostridium carboxidivorans</i> P7.

Project description:Clostridium carboxidivorans P7 (DSM 15243) is a bacterium that converts syngas (a mixture of CO, H2, and CO2) into hexanol. An optimized and scaled-up industrial process could therefore provide a renewable source of fuels and chemicals while consuming industry waste gases. However, the genetic engineering of this bacterium is hindered by its multiple restriction-modification (RM) systems: the genome of C. carboxidivorans encodes at least ten restriction enzymes and eight methyltransferases (MTases). To gain insight into the complex RM systems of C. carboxidivorans, we analyzed genomic methylation patterns using single-molecule real-time (SMRT) sequencing and bisulfite sequencing. We identified six methylated sequence motifs. To match the methylation sites to the predicted MTases of C. carboxidivorans, we expressed them individually in Escherichia coli for functional characterization. Recognition motifs were identified for all three Type I MTases (CAYNNNNNCTGC/GCAGNNNNNRTG, CCANNNNNNNNTCG/CGANNNNNNNNTGG and GCANNNNNNNTNNCG/CGNNANNNNNNNTGC), two Type II MTases (GATAAT and CRAAAAR), and a single Type III MTase (GAAAT). However, no methylated recognition motif was found for one of the three Type II enzymes. One recognition motif that was methylated in C. carboxidivorans but not in E. coli (AGAAGC) was matched to the remaining Type III MTase through a process of elimination. Understanding these enzymes and the corresponding recognition sites will facilitate the development of genetic tools for C. carboxidivorans that can accelerate the industrial exploitation of this strain.

| S-EPMC10745947 | biostudies-literature

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