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Zea mays

ABSTRACT: Genome-wide gene expression profile in inner stem tissue of V2 seedlings and husks (maize B73) [RNA-Seq]

PROVIDER: PRJNA369205 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5217080.fastq.gz	Fastqsanger.gz
	SRR5217090.fastq.gz	Fastqsanger.gz
	SRR5217081.fastq.gz	Fastqsanger.gz
	SRR5217091.fastq.gz	Fastqsanger.gz
	SRR5217082.fastq.gz	Fastqsanger.gz

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Inner stem tissue of V2 seedlings and husks (maize B73)

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Project description:In this study a transcriptomic approach (RNA-sequencing) was utilized to elucidate molecular responses of maize (Zea mays L.) primary roots of the inbred line B73 to water deficit to gain a better understanding of the mechanisms underlying drought tolerance. Kernels of the maize inbred line B73 were germinated in paper rolls soaked with distilled water until seedlings had a primary root length of 2 to 4 cm. For mild and severe water deficit conditions, seedlings were transferred to PEG8000 solution with water potentials of -0.2 MPa and -0.8 MPa, respectively. Water deficit treatment was applied for 6 h and 24 h. Each treatment was performed in four biological replicates each consisting of 10 roots.

2014-05-03 | E-MTAB-4325 | biostudies-arrayexpress

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Project description:Genome-wide gene expression profile in inner stem tissue of V2 seedlings and husks (maize B73) [RNA-Seq]

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RL-SAGE analysis of Zea mays leaf transcriptome

Project description:Using the RL-SAGE method (Gowda et al. 2004), a maize leaf longSAGE library (cv. inbred line B73) was constructed. Leaf tissues were harvested from 4-week old B73 plants for RNA isolation. The conditions in the growth chamber were 12 h light (500 µmol photons m-2 sec-1), 20oC at night, 26oC in the day and 85% relative humidity. A total of 44,870 unique tags (17 bases +CATG) were identified from 232,948 individual tags in the maize leaf library.

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Zea mays Transcriptome or Gene expression

Project description:Maize is one of the most important crops in the world and serves as an excellent model for seed development research. Despite the important role of the transcriptome in development, genome-wide expression throughout the process of maize seed development has not been characterized. Using RNA-seq, we developed a spatio-temporal transcriptome atlas of B73 maize seed development from fertilization to maturity for embryo, endosperm, and whole seed tissue.

2015-02-12 | E-MTAB-4432 | biostudies-arrayexpress

An Interactome Map of Maize (Zea mays L.)

Project description:These data include RNA-seq, circRNA-seq, and small RNA-seq of transcriptome, Ribo-seq of translatome and protein protein binary interactions by recombination-based library vs. library yeast-2-hybrid throughout the lifecycle of the maize inbred line B73.

2022-12-25 | GSE160288 | GEO

Expression analysis of maize (Zea mays L.) genes in continuous light

Project description:Investigation of whole genome gene expression level changes in maize plants (standard maize line B73) in controlled conditions under continuous light. Tissues of the leaf elongation zone were sampled from plants well watered every 12 hours before and after lights on.

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Zea mays Transcriptome or Gene expression

Project description:Sequencing of the maize B73 transcriptome

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RNA-seq samples of ten tissues for Zea mays subsp. mays B73 (version 5)

Project description:These RNA-seq samples represent ten different tissue types for the fifth version of the maize reference genome B73, sequenced by the NAM Consortium Group. These samples correspond to project ID PRJEB32225.

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