Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Novosphingobium panipatense strain:SM16 | isolate:CCM 7472

ABSTRACT: Novosphingobium panipatense SM16 genome sequencing

PROVIDER: PRJNA369982 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5832149_1.fastq.gz	Fastqsanger.gz
	SRR5832149_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Novosphingobium panipatense strain:SM16 | isolate:CCM 7472

Project description:Novosphingobium panipatense SM16 genome sequencing

| PRJNA367791 | ENA

Novosphingobium panipatense

Project description:Novosphingobium panipatense overview

| PRJNA368770 | ENA

Novosphingobium panipatense strain:YII-3

Project description:Novosphingobium panipatense strain:YII-3 Genome sequencing

| PRJNA427869 | ENA

Novosphingobium panipatense strain:P5:ABC

Project description:Novosphingobium panipatense strain:P5:ABC Genome sequencing and assembly

| PRJNA358440 | ENA

Project description:Novosphingobium panipatense SM16

| PRJEB20707 | ENA

Novosphingobium mathurense strain:SM117 | isolate:CCM 7473

Project description:Novosphingobium mathurense SM117 genome sequencing

| PRJNA369981 | ENA

Novosphingobium mathurense strain:SM117 | isolate:CCM 7473

Project description:Novosphingobium mathurense SM117 genome sequencing

| PRJNA367790 | ENA

Isolation and characterization of two recently isolated Novosphingobium oxfordensis sp. nov. and Novosphingobium mississippiensis sp. nov. strains from soil, with LCMS and genome-based investigation of their glycosphingolipid productions

Project description:Isolation and characterization of two recently isolated Novosphingobium oxfordensis sp. nov. and Novosphingobium mississippiensis sp. nov. strains from soil, with LCMS and genome-based investigation of their glycosphingolipid productions

2024-07-03 | MSV000095235 | MassIVE

Transcriptome analysis of the Novosphingobium resinovorum SA1 strain grown on sulfanilic acid and glucose

Project description:Novosphingobium resinovorum strain SA1 is one of few strains capable of degrading sulfanilic acid which is a widely used representative of sulfonated aromatic compounds. In order to identify the elements involved in the biodegradation process and to understand the metabolic responces of the cells exposed to this aromatic compound, we performed a whole transcriptome analysis of cells grown on sulfanilic acid and glucose. Additionally, for distinguish the potential stress/starvation effects of the xenobiotic we compared the transcript profiles of samples taken from both the exponential and stationary growth phases.

2017-08-15 | GSE102626 | GEO

Metabolic capacities of Novosphingobium sp. HR1a in the rhizosphere

Project description:Rhizoremediation, the biotechnology of the utilization of rhizospheric microorganisms associated with plant roots for the elimination of soil contaminants, is based on the ability of microorganisms to metabolize nutrients from plant root exudates, in order to survive the stressful conditions of the rhizosphere, and thereby, to co-metabolize or even mineralize toxic environmental contaminants. Novosphingobium sp. HR1a is a bacterial strain able to degrade a wide variety of polycyclic aromatic hydrocarbons (PAHs). We have demonstrated that this bacterium is able to grow in vegetated microcosms and to eliminate phenanthrene in the presence of clover faster than in non-vegetated systems, establishing a positive interaction with clover. We have studied the molecular basis of this interaction by phenomic, metabolomic and transcriptomic analyses, demonstrating that the positive interaction between clover and Novosphingobium sp. HR1a is a result of the bacterial utilization of different carbon and nitrogen sources (such as sugars, amino acids and organic acids) released during seedling development, and the capacity of exudates to induce the PAH degradation pathway. These results are pointing out to Novosphingobium sp. HR1a as a promising strain for the bioremediation of PAH-contaminated soils.

2021-04-19 | GSE172273 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data