Project description:Experimentally mapped transcriptome structure of Sulfolobus solfataricus P2 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 25 nt). Sulfolobus solfataricus P2 growth curve experiments were conducted in batch culture. Reference samples were cultured at mid-log phase (OD600 = 0.312). Eight samples were collected that spanned the key phases of the growth curve. Total RNA from samples of growth curve and reference were directly labeled with Cy3 or Cy5, and were hybridized to the tiling array. Dye-flip experiments were done for each sample. Log ratios were calculated for each probe (growth curve sample/reference). Transcriptome browser is available at http://baliga.systemsbiology.net/enigma/.

2011-06-27 | E-GEOD-26779 | biostudies-arrayexpress

Saccharolobus solfataricus

Project description:HU treatment of Sulfolobus solfataricus P2

| PRJNA345380 | ENA

Adaptation of Sulfolobus solfataricus P2 to fluctuating O2 concentrations

2009-06-01 | GSE16043 | GEO

Adaptation of Sulfolobus solfataricus P2 to fluctuating O2 concentrations

Project description:Sulfolobus solfataricus P2 was grown aerobically, with O2 concentrations ranging from 1.5 to 26 % (v/v; gas phase). To gain some insight in control of the respiratory system, transcriptomes of the strain cultivated in different O2 concentrations (1.5 % vs 21 %, 1.5 % vs 26 %) were compared using a DNA microarray approach. Two-condition experiments: 1.5% O2 vs two other O2 concentrations (21 or 26% O2). Biological replicates independently grown. One replicate per array. Dye swaps.

2010-05-18 | E-GEOD-16043 | biostudies-arrayexpress

Saccharolobus solfataricus

Project description:Adaptation of Sulfolobus solfataricus P2 to fluctuating O2 concentrations

| PRJNA115515 | ENA

Saccharolobus solfataricus

Project description:Genomewide binding of Sulfolobus solfataricus transcription factor MerR

| PRJNA258358 | ENA

Saccharolobus solfataricus

Project description:Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with STIV

| PRJNA113691 | ENA

Saccharolobus solfataricus strain:SULM

Project description:Sulfolobus solfataricus SULM Genome sequencing and assembly