Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gallus gallus

ABSTRACT: RNA-Sequencing of RCAS(A) and RCAS(A)-Wnt9a infected basilar papillas to identify genes acting downstream of Wnt9a

PROVIDER: PRJNA376576 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5280810_1.fastq.gz	Fastqsanger.gz
	SRR5280810_2.fastq.gz	Fastqsanger.gz
	SRR5280811_1.fastq.gz	Fastqsanger.gz
	SRR5280811_2.fastq.gz	Fastqsanger.gz
	SRR5280812_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

RNA-Sequencing of RCAS(A) and RCAS(A)-Wnt9a infected basilar papillas to identify genes acting downstream of Wnt9a

Project description:This study compared Wnt9a overexpressing basilar papillas to control basilar papillas (BP) from embryonic day 6 (E6) chicken embryos. The goal was to identify genes acting downstream of Wnt9a in the E6 BP. We used Illumina HiSeq with paired-ends and at more than 60 million reads per sample. Differentially expressed genes between Wnt9a overexpressing and control BPs include, but not limited to, genes previously shown to be involved in axon guidance, cell pluripotency, and EMT. pathway,

2017-08-07 | GSE95295 | GEO

Gallus gallus

Project description:Genome-wide strategies identify downstream target genes of connective tissue-associated transcription factors [RNA-seq]

| PRJNA392018 | ENA

Gallus gallus

Project description:Genome-wide strategies identify downstream target genes of connective tissue-associated transcription factors [ChIP-seq Histones]

| PRJNA392020 | ENA

Gallus gallus

Project description:Genome-wide strategies identify downstream target genes of connective tissue-associated transcription factors [ChIP-seq TFs]

| PRJNA392019 | ENA

Beta-catenin/GFP

Project description:293 cells, infected with RCAS-beta-cateninS37A or RCAS-GFP Keywords = 293cells Keywords = beta catenin Keywords: repeat sample

2004-08-11 | GSE1473 | GEO

Transcription profiling of human 293 cells infected with either RCAS-beta-catenin S37A or RCAS-GFP

Project description:293 cells, infected with RCAS-beta-cateninS37A or RCAS-GFP

2007-08-04 | E-GEOD-1473 | biostudies-arrayexpress

Comparative analysis of Gallus gallus cecal epithelia following Eimeria tenella infection

Project description:Relative expression levels of mRNAs in chicken cecal epithelia experimentally infected with Eimeria tenella were measured at 4.5 days post-infection. Two weeks old chickens were uninfected (negative control) or were orally inoculated with sporulated oocysts of Eimeria tenella. Cecal epithelia samples were collected from >12 birds in infected or uninfected group at 4.5 d following infections, in which samples from 4 birds were pooled together to form a total 3 biological replicates in each group. Parasite merozoites were also collected from four infected chickens at 5 d after infections. Uninfected control samples, merozoites and infection group samples were selected for RNA extraction and hybridization on Affymetrix microarrays. We used Affymetrix GeneChip chicken genome arrays to detail the chicken cecal epithelia gene expression in the control and E. tenella-infected birds. Infected, uninfected chicken cecal epithelia and merozoites were selected for RNA extraction and hybridization with Affymetrix microarrays. Our goal was to analyze global transcriptome changes in chicken cecal mucous membranes in response to E. tenella infection in vivo. We used infected (T1,T2,T3; three biological replicates) and uninfected (Neg1, Neg2, Neg3; three biological replicates) samples to identify genes that were differentially expressed. Meanwhile, RNA and probes were also prepared from parasite merozoites (Mzt) from infected samples (Mzt) and used as an additional control in microarray hybridization.

2012-12-10 | E-GEOD-39602 | biostudies-arrayexpress

Gallus gallus

Project description:Expression data from control and gentamicin-treated chick basilar papilla

| PRJNA317506 | ENA

Comparative analysis of Gallus gallus cecal epithelia following Eimeria tenella infection

2012-12-10 | GSE39602 | GEO

Identification of the molecular basis of anti-cancer effect of Huaier.

Project description:Intervention type:DRUG. Intervention1:Huaier, Dose form:GRANULES, Route of administration:ORAL, intended dose regimen:20 to 60/day by either bulk or split for 3 months to extended term if necessary. Control intervention1:None. Primary outcome(s): For mRNA libraries, focus on mRNA studies. Data analysis includes sequencing data processing and basic sequencing data quality control, prediction of new transcripts, differential expression analysis of genes. Gene Ontology (GO) and the KEGG pathway database are used for annotation and enrichment analysis of up-regulated genes and down-regulated genes. For small RNA libraries, data analysis includes sequencing data process and sequencing data process QC, small RNA distribution across the genome, rRNA, tRNA, alignment with snRNA and snoRNA, construction of known miRNA expression pattern, prediction New miRNA and Study of their secondary structure Based on the expression pattern of miRNA, we perform not only GO / KEGG annotation and enrichment, but also different expression analysis.. Timepoint:RNA sequencing of 240 blood samples of 80 cases and its analysis, scheduled from June 30, 2022..

| 2612481 | ecrin-mdr-crc

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data