Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lake water metagenome

ABSTRACT: microbial community diversities of Tuosu Lake

PROVIDER: PRJNA383087 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5451620_1.fastq.gz	Fastqsanger.gz
	SRR5451620_2.fastq.gz	Fastqsanger.gz
	SRR5451630_1.fastq.gz	Fastqsanger.gz
	SRR5451630_2.fastq.gz	Fastqsanger.gz
	SRR5451640_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 88

Similar Datasets

lake water metagenome

Project description:Lake microbial community

| PRJDB7418 | ENA

Lake water metagenome

Project description:SAS2A Thermokast lake microbial community

| PRJNA515027 | ENA

salt lake metagenome

Project description:Tuosu Salt Lake Raw sequence reads

| PRJNA284358 | ENA

salt lake metagenome

Project description:Tuosu Salt lake Raw sequence reads

| PRJNA284354 | ENA

lake water metagenome

Project description:Lake fungal community

| PRJDB7419 | ENA

lake water metagenome

Project description:Lake eukaryotic community

| PRJDB7420 | ENA

A transcriptomics approach to compare transcriptomes of individual methylotrophs from Lake Washington sediment in artificial communities and in pure cultures.

Project description:We established simple synthetic microbial communities in a microcosm model system to determine the mechanisms that underlay cross-feeding in microbial methane-consuming communities. Co-occurring strains from Lake Washington sediment were used that are involved in methane consumption, a methanotroph and two non-methanotrophic methylotrophs.

2016-12-26 | GSE85736 | GEO

lake water metagenome

Project description:Ecogenomics of the microbial community in the water column of Lake Biwa (2018-2019)

| PRJDB12736 | ENA

Climate warming and nutrient enrichment jointly affect microbial functional potentials important to nutrient cycling in shallow-lake mesocosms

Project description:Here, we applied a microarray-based metagenomics technology termed GeoChip 5.0 to investigate spring microbial functional genes in mesocosm-simulated shallow lake ecosystems having been undergoing nutrient enrichment and warming for nine years.

2020-12-30 | GSE155582 | GEO

Metaproteome, Deep Lake, Antarctica

Project description:Deep Lake is a hypersaline system in Antarctica (68°33’36.8S, 78°11’48.7E) that is so saline it remains liquid at –20°C (DeMaere et al 2013). The lake is dominated by haloarchaea, comprising a low-complexity community that differs greatly to warm-hot latitude hypersaline systems, is hierarchical structured, and supports a high level of intergenera gene exchange. Metaproteomics was performed on biomass that was collected in the austral summer of 2008 by sequential size fractionation (20 – 3 µm, 3 – 0.8 µm, 0.8 – 0.1 µm). The data were integrated to obtain a systems level view of the active host-virus interactions occurring in this novel aquatic Antarctic system. DeMaere MZ, Williams TJ, Allen MA, Brown MV, Gibson JA, Rich J, Lauro FM, Dyall-Smith M, Davenport KW, Woyke T, Kyrpides NC, Tringe SG, Cavicchioli R (2013) High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake. Proc Natl Acad Sci USA 110: 16939-16944

2015-07-21 | PXD001436 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data