Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tuber borchii strain:Tbo3840

ABSTRACT: Tuber borchii Tbo3840 Transcriptome

PROVIDER: PRJNA384618 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5623538_1.fastq.gz	Fastqsanger.gz
	SRR5623538_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Tuber borchii strain:Tbo3840

Project description:Tuber borchii Tbo3840 Genome sequencing and assembly

| PRJNA384613 | ENA

Transcriptome metabolic characterization of Tuber borchii SP1, a new Spanish strain for in vitro studies of the Bianchetto truffle

Project description:Truffles are ascomycete hypogeous fungi belonging to the Tuberaceae family of the Pezizales order that grow in ectomycorrhizal symbiosis with tree roots and are known for their peculiar aromas and flavors. Axenic culture of truffle mycelium is problematic because it is not possible in many cases, and the growth rate is meager when it is possible. This limitation prompts searching and characterizing new strains that can be handled in laboratory conditions for basic and applied studies. In this work, a new strain of Tuber borchii (strain SP1) has been isolated and cultured, and its transcriptome has been analyzed under different in vitro culture conditions. The results show that the best T. borchii SP1 growth was obtained using maltose-enriched cultures made with soft-agar and in static submerged cultures made at 22ºC. The transcriptome analysis of this strain cultured in different media indicated that most of the gene transcription effort is due to a limited number of genes (20% of genes account for 80% of the transcription), that the transcription profile of the central metabolism genes was similar in the different conditions analyzed with a transcription signal detected for around 80% of the annotated genes. The gene expression profile suggests that T. borchii uses a fermentative rather than respiratory metabolism, even in aerobic conditions. Finally, there is a reduced expression of genes belonging to secondary metabolite clusters, whereas there is a significative transcription of those involved in producing volatile aromatic compounds.

2023-05-30 | GSE233283 | GEO

Tuber borchii

Project description:An edible ascomycete fungus, commonly known as bianchetto white truffle

| PRJNA41381 | ENA

Tuber borchii

Project description:An edible ascomycete fungus, commonly known as bianchetto white truffle

| PRJNA12855 | ENA

DGE analysis of transcriptome change during photoperiodic regulation of potato tuber formation

Project description:We analyzed the transcriptome change during photoperiodic regulation of potato tuber formation

2014-03-20 | GSE45008 | GEO

Tuber melanosporum gene expression in different tissues

Project description:The Transcriptome of different tissues and developmental stages of Tuber melanosporum was analyzed. The array probes were designed from gene models taken from the French Genoscope - Centre National de Séquençage Tuber melanosporum genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. Another goal was to identify tissue-specific gene expression, e.g. mycorrhiza up-regulated transcripts or fruiting body up-regulated transcripts for further detailed analyses.

2010-04-01 | GSE17529 | GEO

Potato tuber development

Project description:An in vivo and in vitro potato tuber development gene expression study. Keywords: Developmental stage analysis, time course

2007-07-18 | GSE5360 | GEO

The transcriptome landscape of Tuber magnatum

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Tuber magnatum truffles, free-living mycelium and oak mycorrhizal root tips. Paired-end reads of 100 bp were generated and aligned to Tuber magnatum reference transcripts using CLC Genomics Workbench 9.

2018-11-01 | GSE116692 | GEO

Tuber melosporum strain:TBD1

Project description:Tuber melosporum TBD1 Transcriptome - Tubmelo RNA1

| PRJNA619578 | ENA

Tuber mesentericum strain:TBD1

Project description:Tuber mesentericum TBD1 Transcriptome - Tubmes RNA1

| PRJNA619576 | ENA