Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Molecular Epidemiology of Colorectal Cancer (MECC) Metastasis Study/Omni Platform

ABSTRACT: Molecular Epidemiology of Colorectal Cancer (MECC) Metastasis Study/Omni Platform

PROVIDER: PRJNA385887 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

HTT-OMNI: A Web-based Platform for Huntingtin Interaction Exploration and Multi-omics Data Integration

Project description:We have developed a web-based platform for HTT PPI visualization, exploration, and multi-omic integration called HTT-OMNI. We demonstrate the utility of this platform not only for exploring and filtering existing huntingtin (HTT) PPIs, but also for investigating user-generated omics datasets. For example, we demonstrate the comparison of a published HTT IP-MS experiment, performed in the striatum brain region of a mouse HD model, to unpublished HTT IP-MS experiments in the cortex brain region. Overall, HTT-OMNI summarizes and integrates known HTT PPIs with polyQ-dependent transcriptome and proteome measurements, providing an all-in-one exploratory platform that facilitates the prioritization of target genes that may contribute to HD pathogenesis.

2022-08-15 | PXD034158 | Pride

Homo sapiens

Project description:Molecular Epidemiology of Colorectal Cancer (MECC) Metastasis Study/Omni Platform

| PRJNA306392 | ENA

mecC in pigs

Project description:First report of mecC-carrying MRSA in domestic swine

| PRJEB15082 | ENA

Molecular Pathological Epidemiology of Colorectal Cancer

Project description:Molecular Pathological Epidemiology of Colorectal Cancer

| PRJNA640199 | ENA

Molecular Pathological Epidemiology of Colorectal Cancer

Project description:Molecular Pathological Epidemiology of Colorectal Cancer

| PRJNA640198 | ENA

Genomics-based molecular epidemiology of human clinical and feedlot cattle C. jejuni isolates in Alberta, Canada

Project description:Oligonucleotide DNA microarrays were used as a platform to compare C. jejuni isolates from feedlot cattle and human clinical cases from Alberta. Comparative genomic hybridization (CGH) analysis was performed on 87 isolates (46 bovine, 41 human) obtained within the same geographical regions and time frame. In addition, We also performed gene association analysis to determine if any genes may be differentially distributed between human and cattle sources or between clusters dominated by either human or cattle isolates (“human enriched” vs “cattle enriched”). Keywords: Comparative Genomic Hybridization; Genomic epidemiology; Gene-association study

2008-10-17 | GSE13228 | GEO

The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes (Omni-ATAC-seq I)

Project description:T-HF cells were grown either in the presence or absence of DOX. Upon DOX exposure, cells expressed either HA-ICP22 or HA-ICP22 and V5-ICP27. T-HF HA-ICP22 cells were treated with salt stress for 2 hours before proceeding with Omni-ATAC-seq. OMNI-ATAC-seq was conducted for the KOS1.1 strain and compared to a full US1 deletion mutant.

2023-06-20 | GSE185238 | GEO

CIDR: Molecular Pathological Epidemiology of Colorectal Cancer

Project description:CIDR: Molecular Pathological Epidemiology of Colorectal Cancer

| PRJNA574685 | ENA

CIDR: Molecular Pathological Epidemiology of Colorectal Cancer

Project description:CIDR: Molecular Pathological Epidemiology of Colorectal Cancer

| PRJNA574684 | ENA

Epidemiology of tuberculosis

Project description:Epidemiology of tuberculosis

| PRJEB2057 | ENA