Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

H3K36me3 protects the mouse epigenome from single nucleotide variations

ABSTRACT: H3K36me3 protects the mouse epigenome from single nucleotide variations

PROVIDER: PRJNA387441 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

H3K36me3 protects the mouse epigenome from single nucleotide variations [ChIP-Seq]

Project description:We analyze high-throughput profiling of histone H3K36me3 in mouse embryonic stem cells from chromatin immunoprecipitated DNA captured by H3K36me3-specific antibody. We find that H3K36me3 distribution is like expected and enriched at transcribing gene bodies especially with enrichment at 3’-terminal of gene body, which is identical with findings observed in other mammalian cells.

2019-08-01 | GSE99154 | GEO

H3K36me3 protects the mouse epigenome from single nucleotide variations

Project description:We adopt histone H3 mutants competitive incorporation system to screen the effects of them on genetic fidelity. We find incorporation of H3K36M, an oncogenic histone mutant, produce a cancer or ageing-like genetic landscape by punctuating the H3K36me3/H3K9me3 dependent DNA repair mechanism. This work firstly get a direct relationship between epigenetic inheritance and genomic stability

2019-08-01 | GSE99156 | GEO

Mus musculus

Project description:H3K36me3 protects the mouse epigenome from single nucleotide variations [CGH]

| PRJNA390055 | ENA

H3K36me3 protects the mouse epigenome from single nucleotide variations [CGH]

Project description:Copy numbers of mouse cells (ESCs and NIH3T3) carrying a series of single-site histone mutants or shRNAs comparing with control empty cells. Genomic DNA from candidate cells and control cells were respectively labeled by Cy5 or Cy3 and analyzed by array-based comparative genomic hybridization (aCGH).

2019-08-01 | GSE99907 | GEO

Mus musculus

Project description:H3K36me3 protects the mouse epigenome from single nucleotide variations [mRNA-Seq]

| PRJNA387443 | ENA

Mus musculus

Project description:H3K36me3 protects the mouse epigenome from single nucleotide variations [ChIP-Seq]

| PRJNA387442 | ENA

H3K36me3 protects the mouse epigenome from single nucleotide variations [mRNA-Seq]

Project description:The goals of this project are to study the transcriptome profiling (RNA-seq) of mouse embryonic stem cells by histone mutants incorporation (H3.1K3M, H3.1K36M vs H3.1wt) or shRNA-mediated knockdown of methyl-transferase Suv39h1/h2 (shSuv39h1, shSuv39h2 vs shNC)

2019-08-01 | GSE99155 | GEO

h3k36me3-Establishing a reference epigenome in arabidopsis seedlings

Project description:gfe_epigenome - h3k36me3 - Epigenomic mapping - H3K36me3 2 dye-swap - chip-chip

2011-04-19 | E-GEOD-24646 | biostudies-arrayexpress

h3k36me3-Establishing a reference epigenome in arabidopsis seedlings

Project description:gfe_epigenome - h3k36me3 - Epigenomic mapping - H3K36me3

2011-04-19 | GSE24646 | GEO

Establishing a reference epigenome in arabidopsis seedlings

Project description:This SuperSeries is composed of the following subset Series: GSE24646: h3k36me3-Establishing a reference epigenome in arabidopsis seedlings GSE24647: h3k9me2-Establishing a reference epigenome in arabidopsis seedlings GSE24648: h3k4me2-Establishing a reference epigenome in arabidopsis seedlings GSE24649: h3k4me3-Establishing a reference epigenome in arabidopsis seedlings GSE24650: h3k9me3-Establishing a reference epigenome in arabidopsis seedlings GSE24651: h3k27me3-Establishing a reference epigenome in arabidopsis seedlings GSE24652: h3k27me2-Establishing a reference epigenome in arabidopsis seedlings GSE24653: h3k56ac-Establishing a reference epigenome in arabidopsis seedlings GSE24654: h4k20me1-Establishing a reference epigenome in arabidopsis seedlings GSE24655: h3-Establishing a reference epigenome in arabidopsis seedlings GSE24656: h2bub-Establishing a reference epigenome in arabidopsis seedlings GSE24657: h3k27me3_gw-Establishing a reference epigenome in arabidopsis seedlings GSE24658: h3k4me3_gw-Establishing a reference epigenome in arabidopsis seedlings GSE24659: h3k4me2_gw-Establishing a reference epigenome in arabidopsis seedlings GSE24660: 5mc_gw-Establishing a reference epigenome in arabidopsis seedlings GSE24661: h3k36me3_gw-Establishing a reference epigenome in arabidopsis seedlings GSE24662: h3k27me1_gw-Establishing a reference epigenome in arabidopsis seedlings GSE24663: h3_gw-Establishing a reference epigenome in arabidopsis seedlings GSE24664: h3k27me3_roots_gw-Establishing a reference epigenome in arabidopsis seedlings GSE24665: h3k4me3_roots_gw-Establishing a reference epigenome in arabidopsis seedlings Refer to individual Series

2011-04-19 | E-GEOD-24710 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data