Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis epiRILs, epiHybrids and Colombia wild type

ABSTRACT: Arabidopsis epiRILs, epiHybrids and Colombia wild type

PROVIDER: PRJNA388582 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5631360_1.fastq.gz	Fastqsanger.gz
	SRR5631360_2.fastq.gz	Fastqsanger.gz
	SRR5631370_1.fastq.gz	Fastqsanger.gz
	SRR5631370_2.fastq.gz	Fastqsanger.gz
	SRR5631380_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 173

Similar Datasets

Genome-wide gene expression profile from Arabidopsis epiRILs, epiHybrids and Colombia wild type

Project description:Despite the importance and wide exploitation of heterosis in commercial crop breeding, the molecular mechanisms behind this phenomenon are not completely understood. In this study we aimed to understand and quantify the contribution of DNA methylation variation to heterosis in various traits of Arabidopsis. Therefore we created epigenetic hybrid lines from ddm1-derived epiRILs. We performed RNA sequencing on four epiHybrids and their parental lines (epiRILs & Col-wt) in duplicates/triplicates to understand gene expression changes in hybrids genome wide and with a focus on previously mapped QTL regions.

2017-12-07 | GSE99405 | GEO

Genome-wide DNA methylation profiles from Arabidopsis epiRILs, epiHybrids and Colombia wild type

Project description:Despite the importance and wide exploitation of heterosis in commercial crop breeding, the molecular mechanisms behind this phenomenon are not completely understood. In this study we aimed to understand and quantify the contribution of DNA methylation variation to heterosis in various traits of Arabidopsis. Therefore we created epigenetic hybrid lines from ddm1-derived epiRILs. We performed whole genome bisulfite sequencing on four epiHybrids and their parental lines (epiRILs & Col-wt) in duplicates to understand methylome remodelling in hybrids genome wide and with a focus on previously mapped QTL regions.

2017-12-07 | GSE99404 | GEO

Arabidopsis thaliana

Project description:Genome-wide gene expression profile from Arabidopsis epiRILs, epiHybrids and Colombia wild type

| PRJNA388580 | ENA

Arabidopsis thaliana

Project description:Genome-wide DNA methylation profiles from Arabidopsis epiRILs, epiHybrids and Colombia wild type

| PRJNA388579 | ENA

Arabidopsis thaliana

Project description:Genome re-sequencing of Arabidopsis epiRILs and epiHybrids

| PRJNA388729 | ENA

Parental pericentromeric methylation status drives methylome remodeling and heterosis in Arabidopsis hybrids [WGBS_epiHybrids]

Project description:WGBS of 169 ddm1-derived epiHybrids and their corresponding maternal msCol lines A large number of epiHybrids families (169 epiHybrids) were generated by crossing a male sterile maternal plant of the Columbia accession (msCol) to different paternal ddm1-2 derived epiRILs (Johannes et al., 2009)

2024-01-26 | GSE211715 | GEO

Genome re-sequencing of Arabidopsis epiRILs and epiHybrids

Project description:Despite the importance and wide exploitation of heterosis in commercial crop breeding, the molecular mechanisms behind this phenomenon are not completely understood. In this study we aimed to understand and quantify the contribution of DNA methylation variation to heterosis in various traits of Arabidopsis. Therefore we created epigenetic hybrid lines from ddm1-derived epiRILs. We performed whole genome sequencing on four epiHybrids and their parental lines (epiRILs & Col-wt) in duplicates to examine structural variants in hybrids genome wide and with a focus on previously mapped QTL regions.

2017-12-07 | GSE99481 | GEO

Parental pericentromeric methylation status drives methylome remodeling and heterosis in Arabidopsis hybrids [smallRNAseq]

Project description:A large number of epiHybrids families were generated by crossing a male sterile maternal plant of the Columbia accession (msCol) to different paternal ddm1-2 derived epiRILs (Johannes et al., 2009)

2024-01-26 | GSE211718 | GEO

Parental pericentromeric methylation status drives methylome remodeling and heterosis in Arabidopsis hybrids [Transcriptome]

2024-01-26 | GSE211714 | GEO

Arabidopsis seedlings: wild-type vs. gcn20

Project description:Arabidopsis seedlings: wild-type vs. gcn20

| PRJNA563651 | ENA