Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: RNA-sequencing of Mbd3-null and control haematopoietic stem cell and lymphoid progenitor cell populations

PROVIDER: PRJNA395315 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5856850.fastq.gz	Fastqsanger.gz
	SRR5856860.fastq.gz	Fastqsanger.gz
	SRR5856870.fastq.gz	Fastqsanger.gz
	SRR5856880.fastq.gz	Fastqsanger.gz
	SRR5856890.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 80

Similar Datasets

Mbd3-null and control lymphoid progenitor cells

Project description:Mbd3-null and control lymphoid progenitor cells

| PRJNA395314 | ENA

Mus musculus

Project description:Single cell RNA-sequencing of Mbd3-null and control lymphoid progenitor cells

| PRJNA395242 | ENA

RNA-sequencing of Mbd3-null and control haematopoietic stem cell and lymphoid progenitor cell populations

Project description:To determine the role of Mbd3/NuRD in lymphopoiesis, gene expression in purified populations of Mbd3-deleted and control lymphoid progenitor cells was analysed using RNA-seq.

2017-07-22 | GSE101732 | GEO

ATAC-seq analysis of chromatin accessibility in Mbd3-null and control lymphoid progenitor cells

Project description:To determine the role of Mbd3/NuRD in lymphopoiesis, chromatin accessbility was analysed in purified populations of Mbd3-deleted and control lymphoid progenitor cells using the assay for transposase-accessible chromatin using sequencing (ATAC-seq).

2017-07-22 | GSE101729 | GEO

Mus musculus

Project description:ATAC-seq analysis of chromatin accessibility in Mbd3-null and control lymphoid progenitor cells

| PRJNA395309 | ENA

Single cell RNA-sequencing of Mbd3-null and control lymphoid progenitor cells

Project description:To determine the role of Mbd3/NuRD in lymphopoiesis, gene expression in single Mbd3-deleted and control lymphoid progenitor cells was analysed using single cell RNA-seq

2017-09-08 | GSE101712 | GEO

Transcriptional profiling of CML and normal, stem and progenitor haematopoietic cells.

Project description:Transcriptional profiling of four cell populations to understanding chronic myeloid leukaemia in humans. The populations are normal haematopoietic stem cells (HSC), normal progenitor cells (HPC), CML stem cells (LSC) and CML progenitor cells (LPC).

2016-05-26 | E-MTAB-2581 | biostudies-arrayexpress

The transcriptional landscape of mouse blood stem/progenitor cell transitions at single cell resolution

Project description:Current gene-expression databases for the haematopoietic system provide information on gene expression profiles present in bulk populations. Although informative, these studies lack the resolution that can be gained at a single-cell level. In particular, population-average data assumes homogeneity within the population and may as such obscure the ability to detect the heterogeneity of decision-making processes in individual cells. Here we report 1656 single cell transcriptomes analysed by single-cell RNA sequencing. Cells were FACS sorted on broad gates encompassing haematopoietic stem and progenitor populations (HSPCs), with index sorting data collected to permit retrospective identification of populations by surface marker expression. Our dataset thus represents the gene expression landscape of HSPCs at single-cell resolution, capturing the heterogeneity in and between cell populations. Pseudotime analysis visualized haematopoietic stem (HSC) to progenitor transitions, identified HSC as well as lineage-specific transcriptional programs, and also highlighted putative lineage branching points. To provide access to the wider scientific community, a user-friendly website was developed with intuitive search and display functionality. Single cell RNA sequencing of haematopoeitic stem and progenitor cells

2016-07-04 | E-GEOD-81682 | biostudies-arrayexpress

Functional and genetic heterogeneity of distinctive leukaemic stem cell populations in CD34- human Acute Myeloid Leukaemia

Project description:We performed RNA-sequencing of normal haematopoietic stem cells and progenitor populations and of Leukemic Stem Cells in CD34- Acute Myeloid Leukaemia.

2016-06-22 | E-MTAB-2672 | biostudies-arrayexpress

Cucuianu2010 - A hypothetical-mathematical model of acute myeloid leukaemia pathogenesis

Project description:This is a simple mathematical model describing the growth and removal of normal and leukemic haematopoietic stem cell populations and the role of these cellular processes in generating monoclonal leukemic patterns.

2024-09-02 | BIOMD0000000799 | BioModels

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data