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Melampsora larici-populina 98AG31

ABSTRACT: Melampsora larici-populina 98AG31 S1 mapping population resequencing - A121 genome sequencing

PROVIDER: PRJNA403637 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6828019_1.fastq.gz	Fastqsanger.gz
	SRR6828019_2.fastq.gz	Fastqsanger.gz

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Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 Genome sequencing

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Early infection of poplar leaves by the rust pathogen Melampsora larici-populina

Project description:The identification of early-expressed pathogen effectors and early-modulated host functions is currently a major goal to understand the molecular basis of biotrophic lifestyle. Melampsora larici-populina isolates 98AG31 and 93ID6, respectively virulent and avirulent on the hybrid P. trichocarpa x P. deltoides poplar cultivar M-bM-^@M-^XBeauprM-CM-)M-bM-^@M-^Y were used in this study. Inoculations were performed on 5 cm2 leaf disks. The following conditions were used for oligoarrays: Incompatible 18, 21 and 24 hpi, Compatible 18, 24 and 48hpi. One aim of this study was to compare RNA-Seq and hybridization-based approaches, therefore the cDNA templates were used for whole-genome poplar oligoarrays and 454-pyrosequencing. We performed 6 hybridizations (Nimblegen) with samples derived from incompatible (18, 21 and 24hpi) and compatible (18, 24 and 48hpi) interactions of Melampsora larici-populina with P. trichocarpa x P. deltoides poplar cultivar M-bM-^@M-^XBeauprM-CM-)M-bM-^@M-^Y leaves. All samples were labeled with Cy3.

2012-09-01 | E-GEOD-34802 | biostudies-arrayexpress

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Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A030 genome sequencing

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Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A133 genome sequencing

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