Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rosa chinensis cultivar:Old Blush

ABSTRACT: Rosa chinensis cultivar:Old Blush Genome sequencing and assembly

PROVIDER: PRJNA413292 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR6169180_subreads.fastq.gz	Fastqsanger.gz
	SRR6169190_subreads.fastq.gz	Fastqsanger.gz
	SRR6169200_subreads.fastq.gz	Fastqsanger.gz
	SRR6169210_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 41

Similar Datasets

Rosa chinensis cultivar:Old Blush

Project description:Rosa chinensis cultivar:Old Blush Transcriptome or Gene expression

| PRJNA351281 | ENA

RNAseq reads of Rosa chinensis cv. ‘Old Blush’ and Rosa x wichurana

Project description:RNAseq raw sequence reads of rose petals from Rosa chinensis cv. ‘Old Blush’, Rosa x wichurana and their 2 progenies

| PRJEB37774 | ENA

Rosa chinensis cultivar:Old Blush

Project description:RcMYB84 and RcMYB123 synergistically mediate JA induced defense against Botrytis cinerea in Rosa chinensis

| PRJNA606918 | ENA

Rosa chinensis cultivar:103

Project description:Rosa chinensis cultivar:103 Genome sequencing

| PRJNA753590 | ENA

Rosa chinensis breed:Rosa chinensis

Project description:Rosa chinensis breed:Rosa chinensis Raw sequence reads

| PRJNA905852 | ENA

Transcriptome and gene expression analysis during flower blooming in Rosa chinensis ‘Pallida’

Project description:Rosa chinensis ‘Pallida’ (Rosa L.) is one of the most important ancient rose cultivars originating from China. It contributed the ‘tea scent’ trait to modern roses. However, little information is available on the gene regulatory networks involved in scent biosynthesis and metabolism in Rosa. In this study, the transcriptome of R. chinensis ‘Pallida’ petals at different developmental stages, from flower buds to senescent flowers, was investigated using Illumina sequencing technology. De novo assembly generated 89,614 clusters with an average length of 428 bp. Based on sequence similarity search with known proteins, 62.9% of total clusters were annotated. Out of these annotated transcripts, 25,705 and 37,159 sequences were assigned to gene ontology and clusters of orthologous groups, respectively. The dataset provides information on transcripts putatively associated with known scent metabolic pathways. Digital gene expression (DGE) was obtained using RNA samples from flower bud, open flower and senescent flower stages. Comparative DGE and quantitative real time PCR permitted the identification of five transcripts encoding proteins putatively associated with scent biosynthesis in roses. The study provides a foundation for scent-related genes discovery in roses.

2015-01-01 | GSE54486 | GEO

Rosa chinensis cv 'Old Blush' genome

Project description:The Rosa genome provides new insights into the design of modern roses

| PRJEB24406 | ENA

Rosa chinensis

Project description:Rosa chinensis Genome sequencing

| PRJNA1130681 | ENA

Rosa chinensis

Project description:Rosa chinensis Organism overview

| PRJNA72591 | ENA

Rosa chinensis

Project description:Rosa chinensis Raw sequence reads