Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Epigenetic control of genes and transposable elements [ATAC-seq]

ABSTRACT: Epigenetic control of genes and transposable elements [ATAC-seq]

PROVIDER: PRJNA422437 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6376930_1.fastq.gz	Fastqsanger.gz
	SRR6376930_2.fastq.gz	Fastqsanger.gz
	SRR6376940_1.fastq.gz	Fastqsanger.gz
	SRR6376940_2.fastq.gz	Fastqsanger.gz
	SRR6376950_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

Epigenetic control of genes and transposable elements

Project description:Epigenetic control of genes and transposable elements

| PRJNA422428 | ENA

Epigenetic control of genes and transposable elements [inhibitor RNA-seq]

Project description:Epigenetic control of genes and transposable elements [inhibitor RNA-seq]

| PRJNA422435 | ENA

Epigenetic control of genes and transposable elements [Knockdown RNA-seq]

Project description:Epigenetic control of genes and transposable elements [Knockdown RNA-seq]

| PRJNA422436 | ENA

Epigenetic control of genes and transposable elements [ATAC-seq]

Project description:Epigenetic control is an elaborate system the cell uses to control aspects of cell type and gene control. Histones and DNA are chemically modified to signal epigenetic information as to whether a gene is active or inactive, and so maintain cell type stability. Whilst epigenetic control of genes has been explored, the control of the rest of the genome is less well explored. The bulk of DNA and chromatin consists of repetitive elements, not genes, and these TEs must be tightly regulated to provide structure and function for nearby genes and, ultimately, cell type control. In this project we explore the intereaction of epigenetic control factors, and inhibitors, and how perturbation of the epigenetic control system disrupts TE regulation inside embryonic stem cells.

2018-12-11 | GSE108086 | GEO

Epigenetic dysregulation of transposable elements in cognitive impairment and Alzheimer’s disease

Project description:Growing evidence implicates transposable elements (TEs) in aging and Alzheimer’s disease (AD). To evaluate potential transcriptional and epigenetic differences related to TE expression in this context, we generated whole blood total RNA-seq, and peripheral blood cell whole-genome bisulfite sequencing (WGBS), and transposase-accessible chromatin sequencing (ATAC-seq) on samples from healthy middle-aged/older adults, mild cognitive impairment (MCI), and AD patients.

2024-08-01 | GSE270454 | GEO

Mechanisms of interindividual epigenetic variability at CpG dense transposable elements

Project description:Mechanisms of interindividual epigenetic variability at CpG dense transposable elements

| PRJNA735220 | ENA

Epigenetic control of genes and transposable elements [Knockdown RNA-seq]

2018-12-11 | GSE108087 | GEO

Epigenetic control of genes and transposable elements [inhibitor RNA-seq]

2018-12-11 | GSE108090 | GEO

Epigenetic control of transposable elements in the mouse male germ line by Tex15

Project description:Epigenetic control of transposable elements in the mouse male germ line by Tex15

| PRJNA421558 | ENA

Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution