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Gene expression dataset for nursery-reared Staghorn coral (Acropora cervicornis) under thermal stress

ABSTRACT: Gene expression dataset for nursery-reared Staghorn coral (Acropora cervicornis) under thermal stress

PROVIDER: PRJNA423227 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6396380.fastq.gz	Fastqsanger.gz
	SRR6396371.fastq.gz	Fastqsanger.gz
	SRR6396381.fastq.gz	Fastqsanger.gz
	SRR6396372.fastq.gz	Fastqsanger.gz
	SRR6396382.fastq.gz	Fastqsanger.gz

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Similar Datasets

Gene expression dataset for nursery-reared Staghorn coral (Acropora cervicornis) under thermal stress

Project description:Publication Abstract: As climate changes, sea surface temperature anomalies that negatively impact coral reef organisms continue to increase in frequency and intensity. Yet, despite widespread coral mortality, genetic diversity remains high even in those coral species listed as threatened. While this is good news in many ways it presents a challenge for the development of biomarkers that can identify resilient or vulnerable genotypes. Taking advantage of three coral restoration nurseries in Florida that serve as long-term common garden experiments, we exposed over thirty genetically distinct Acropora cervicornis colonies to hot and cold temperature shocks seasonally and measured pooled gene expression responses using RNAseq. Targeting a subset of twenty genes, we designed a high-throughput qPCR array to quantify expression in all individuals separately under each treatment with the goal of identifying predictive and/or diagnostic thermal stress biomarkers. We observed extensive transcriptional variation in the population, suggesting abundant raw material is available for adaptation via natural selection. However, this high variation made it difficult to correlate gene expression changes with colony performance metrics such as growth, mortality, and bleaching susceptibility. Nevertheless, we identified several promising diagnostic biomarkers for acute thermal stress that may improve coral restoration and climate change mitigation efforts in the future.

2017-12-21 | GSE108338 | GEO

Acropora cervicornis

Project description:Acropora cervicornis overview

| PRJNA273677 | ENA

Acropora cervicornis

Project description:Acropora cervicornis Raw sequence reads

| PRJNA344447 | ENA

Acropora cervicornis

Project description:Acropora cervicornis Raw sequence reads

| PRJNA555587 | ENA

Acropora cervicornis

Project description:RNA-seq profiles of Immune Related Genes the Staghorn Coral Acropora cervicornis infected with White Band Disease

| PRJNA222758 | ENA

Acropora cervicornis

Project description:Acropora cervicornis Genome sequencing and assembly

| PRJNA656309 | ENA

Variability in metabolomic profiles among unique genotypes of Acropora cervicornis (part -III)

Project description:This project aims to identify differences in metabolomic profiles among seven known, unique genotypes of the threatened staghorn coral Acropora cervicornis.

2020-12-22 | ST001645 | MetabolomicsWorkbench

Acropora cervicornis

Project description:Genomic Variation Among Populations of Threatened Coral: Acropora cervicornis

| PRJNA273657 | ENA

Acropora cervicornis isolate:K2

Project description:Acropora cervicornis isolate:K2 Genome sequencing and assembly

| PRJNA948411 | ENA

Spatial distribution of microbial communities among colonies and genotypes in nursery-reared <i>Acropora cervicornis</i>.

Project description:BackgroundThe architecturally important coral species Acropora cervicornis and A. palmata were historically common in the Caribbean, but have declined precipitously since the early 1980s. Substantial resources are currently being dedicated to coral gardening and the subsequent outplanting of asexually reproduced colonies of Acropora, activities that provide abundant biomass for both restoration efforts and for experimental studies to better understand the ecology of these critically endangered coral species.MethodsWe characterized the bacterial and archaeal community composition of A. cervicornis corals in a Caribbean nursery to determine the heterogeneity of the microbiome within and among colonies. Samples were taken from three distinct locations (basal branch, intermediate branch, and branch tip) from colonies of three different coral genotypes.ResultsOverall, microbial community composition was similar among colonies due to high relative abundances of the Rickettsiales genus MD3-55 (Candidatus Aquarickettsia) in nearly all samples. While microbial communities were not different among locations within the same colony, they were significantly different between coral genotypes. These findings suggest that sampling from any one location on a coral host is likely to provide a representative sample of the microbial community for the entire colony. Our results also suggest that subtle differences in microbiome composition may be influenced by the coral host, where different coral genotypes host slightly different microbiomes. Finally, this study provides baseline data for future studies seeking to understand the microbiome of nursery-reared A. cervicornis and its roles in coral health, adaptability, and resilience.

| S-EPMC7456258 | biostudies-literature

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