Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: shotgun metagenome sequencing salmo salar gut microbiota

PROVIDER: PRJNA433811 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6706335_1.fastq.gz	Fastqsanger.gz
	SRR6706335_2.fastq.gz	Fastqsanger.gz
	SRR6706336_1.fastq.gz	Fastqsanger.gz
	SRR6706336_2.fastq.gz	Fastqsanger.gz
	SRR6706337_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Zearalenone-induced aberration in gut microbiome composition and function are associated with degeneration in ovary reserve

Project description:We applied metagenomic shotgun sequencing to investigate the effects of ZEA exposure on the change of mouse gut microbiota composition and function.

2019-11-09 | GSE140149 | GEO

mWGS analysis of the fecal microbiota of WT and TCRb-/- mice

Project description:The gut microbiota plays an important role in host health. Microbiota dysbiosis has been implicated in the global epidemic of Metabolic Syndrome (MetS) and could impair host metabolism by noxious metabolites. It has been well established that the gut microbiota is shaped by host immune factors. However, the effect of T cells on the gut microbiota is yet unknown. Here, we performed a metagenomic whole-genome shotgun sequencing (mWGS) study of the microbiota of TCRb-/- mice, which lack alpha/beta T cells.

2024-05-06 | GSE262397 | GEO

Salmo salar

Project description:Salmo salar gut transcriptome and microbiota

| PRJNA679207 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJNA433811 data set (shotgun metagenome sequencing salmo salar gut microbiota).

| PRJEB55067 | ENA

Project description:Microbiota of Salmo salar

| PRJNA498084 | ENA

Project description:16S rRNA gene sequencing of salmo salar gut microbiota

| PRJNA433462 | ENA

Project description:Gut microbiota from 23 families of Salmo salar

| PRJNA590084 | ENA

ena-DATASET-KULVIB-08-10-2021-14:28:41:370-84 - samples

Project description:Variation and transmission of the human gut microbiota across generations - shotgun sequencing data

| EGAD00001008207 | EGA

Bone collagen from Pacific salmonid species contains differences allowing for peptide mass fingerprinting for easy identification

Project description:MS/MS spectra of archaeological (Oncorhynchus) and modern (Salmo salar) bone collagen.

2019-04-15 | MSV000083687 | MassIVE

Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

Project description:Animals and their associated microbiota share long evolutionary histories. However, it is not always clear how host genotype and microbiota interact to affect phenotype. We applied a hologenomic approach to explore how host-microbiota interactions shape lifetime growth and parasite infection in farmed Atlantic salmon (Salmo salar). Multi-omics data sets were generated from the guts of 460 salmon, 82% of which were naturally infected with an intestinal cestode. A single Mycoplasma bacterial strain, MAG01, dominated the gut metagenome of large, non-parasitized fish, consistent with previous studies showing high levels of Mycoplasma in the gut microbiota of healthy salmon. While small and/or parasitized salmon also had high abundance of MAG01, we observed increased alpha diversity in these individuals, driven by increased frequency of low-abundance Vibrionaceae and other Mycoplasma species that carried known virulence genes. Colonization by one of these cestode-associated Mycoplasma strains was associated with host individual genomic variation in long non-coding RNAs. Integrating the multi-omic data sets revealed coordinated changes in the salmon gut mRNA transcriptome and metabolome that correlated with shifts in the microbiota of smaller, parasitized fish. Our results suggest that the gut microbiota of small and/or parasitized fish is in a state of dysbiosis that partly depends on the host genotype, highlighting the value of using a hologenomic approach to incorporate the microbiota into the study of host-parasite dynamics.

2024-01-24 | MTBLS8575 | MetaboLights

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data