Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Xanthomonas FL diversity study

PROVIDER: PRJNA436012 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR6784190_1.fastq.gz	Fastqsanger.gz
	SRR6784190_2.fastq.gz	Fastqsanger.gz
	SRR6784200_1.fastq.gz	Fastqsanger.gz
	SRR6784200_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 135

Similar Datasets

Xanthomonas perforans

Project description:Xanthomonas FL diversity study

| PRJNA435675 | ENA

Project description:Xanthomonas FL diversity study SC

| PRJNA506994 | ENA

Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant

Project description:Transcription profiling of the DSF regulon in Xanthomonas oryzae pv. oryzae (Xoo) using wild type and the rpfF mutant. Cell-cell signaling mediated by the quorum sensing molecule known as Diffusible Signaling factor (DSF) is required for virulence of Xanthomonas group of plant pathogens. DSF in different Xanthomonas and the closely related plant pathogen Xylella fastidiosa regulates diverse traits in a strain specific manner. The transcriptional profiling performed in this study is to elucidate the traits regulated by DSF from the Indian isolate of Xanthomonas oryzae pv. oryzae, which exhibits traits very different from other Xanthomonas group of plant pathogen. In this study, transcription analysis was done between a wild type Xanthomonas oryzae pv. oryzae strain and an isogenic strain that has a mutation in the DSF biosynthetic gene rpfF.

2011-04-02 | GSE27809 | GEO

Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant

2011-04-02 | E-GEOD-27809 | biostudies-arrayexpress

Two-Species interaction through pH stabilisation

Project description:Here we apply a metabolomics to study the interaction of two co-isolated model organisms, Xanthomonas retroflexus and Paenibacillus amylolyticus. When cultured in close proximity on agar plates Xanthomonas retroflexus induces a clear morphological response from Paenibacillus amylolyticus, leading to enhanced growth of Paenibacillus amylolyticus. Application of 2D spatial metabolomics shows how Xanthomonas retroflexus influences the chemical environment by production specific metabolites.

2018-06-19 | MSV000082481 | MassIVE

Xanthomonas euvesicatoria pv. citrumelo F1 strain:FL 1195

Project description:Xanthomonas axonopodis pv. citrumelo FL 1195 genome sequencing

| PRJNA62495 | ENA

Decoupling astrocytes in adult mice impairs synaptic plasticity and spatial learning

Project description:To study the role of the gap junction coupled astrocytic network, we generated inducible double knockouts to selectively delete Cx30 and Cx43 from astrocytes in adult mice. Mice carrying loxP-flanked Gjb6 (Cx30fl/fl mice) (Boulay et al., 2013) and Gja1 (Cx43fl/fl mice) (Theis et al., 2003) alleles were crossbred with mice expressing the tamoxifen-sensitive Cre-recombinase CreERT2 under the endogenous GLAST(Slc1a3)-promoter (Mori et al., 2006). Adult, 8-10 week old mice (Cx30fl/fl:Cx43fl/fl:GLASTCreERT2/+, termed cKO) and littermate control mice (Cx30fl/fl:Cx43fl/fl:GLAST+/+) were injected with tamoxifen for 5 consecutive days and hippocampi were isolated for subsequent TMT-based proteomics analysis 90 days after tamoxifen treatment, to study the consequences of astrocyte decoupling and connexin deletion.

2022-03-14 | PXD031136 | Pride

Genome-wide profiling for H2A.Z and genome accessibility using ATACseq in Uhrf1hepKO mouse livers compared to WT livers

Project description:This study was carried out to investigate potential changes in the genome-wide distribution of H2AZ and genome accessibility using ATACseq in livers where Uhrf1 is deleted in hepatocytes (Uhrf1-fl/fl;Alb:Cre) compared to controls (Uhrf1-fl/fl).

2020-07-17 | GSE153090 | GEO

Transcriptional response of wild type and dmr6 mutants of tomato to Xanthomonas gardneri

Project description:This study evaluates the transcriptional response of Solanum lycopersicum cv. Fla. 8000 (wild-type and dmr6 mutants) to the pathogen Xanthomonas gardneri 153.

2021-06-14 | GSE157154 | GEO

Transcriptome analysis of time couse of leafy spurge infection with Xam

Project description:The goal of this study was to identify signaling processes associated with infection and recovery of leafy spurge inoculated with Xanthomonas axonopodis pv. manihotis (Xam).

2009-08-15 | GSE15751 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data