Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Wildtype Yeast Ribosome Profiling

PROVIDER: PRJNA437703 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6823415.fastq.gz	Fastqsanger.gz
	SRR6823416.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

E-MTAB-6963

Project description:Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae

2018-11-16 | E-MTAB-6963 | ExpressionAtlas

Ribosome profiling of whi3 mutant yeast

Project description:In general, RNA-binding proteins act to modulate gene expression at transcript level through degradation or at protein level through translation. To elucidate the effect of Whi3, a yeast RNA binding protein, on gene expression, we performed ribosome profiling experiment on whi3 mutant and wildtype cells. Comparison ribosome profiling and RNA-seq data between whi3 mutant and wildtype cells

2013-09-26 | E-GEOD-51164 | biostudies-arrayexpress

Ribosome profiling of whi3 mutant yeast

2013-09-26 | GSE51164 | GEO

Saccharomyces cerevisiae

Project description:Ribosome profiling of dhh1∆ yeast

| PRJNA348115 | ENA

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates

Project description:Although protein synthesis dynamics has been studied both with theoretical models and by profiling ribosome footprints, the determinants of ribosome flux along open reading frames (ORFs) are not fully understood. Combining measurements of protein synthesis rate with ribosome footprinting data, we here inferred translation initiation and elongation rates for over a thousand ORFs in exponentially-growing wildtype yeast cells. We found that the amino acid composition of synthesized proteins is as important a determinant of translation elongation rate as parameters related to codon and tRNA adaptation. We did not find evidence of ribosome collisions curbing the protein output of yeast transcripts, either in high translation conditions associated with exponential growth, or in strains in which deletion of individual ribosomal protein genes leads to globally increased or decreased translation. Slow translation elongation is characteristic of RP-encoding transcripts, which have markedly lower protein output compared to other transcripts with equally high ribosome densities.

2019-09-10 | PXD014357 | Pride

Saccharomyces cerevisiae

Project description:Ribosome profiling of whi3 mutant yeast

| PRJNA221377 | ENA

Project description:Ribosome profiling of nocodazole treated budding yeast

| PRJNA814219 | ENA

Project description:Yeast WT ribosome profiling sequences (Panasenko's project)

| PRJNA512900 | ENA

E-MEXP-27

Project description:Transcription profiling by array of yeast mutants

2014-07-03 | E-MEXP-27 | ExpressionAtlas

Project description:Ribosome Profiling of heat shock response in yeast