Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient

PROVIDER: PRJNA453542 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7063040_1.fastq.gz	Fastqsanger.gz
	SRR7063040_2.fastq.gz	Fastqsanger.gz
	SRR7063050_1.fastq.gz	Fastqsanger.gz
	SRR7063050_2.fastq.gz	Fastqsanger.gz
	SRR7063060_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 90

Similar Datasets

Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges

Project description:Marine sponges (phylum Porifera) are leading organisms for the discovery of bioactive compounds from nature. Their often rich and species-specific microbiota is hypothesised to be producing many of these compounds. Yet, environmental influences on the sponge-associated microbiota and bioactive compound production remain elusive. Here, we investigated the changes of microbiota and metabolomes in sponges along a depth range of 1232 m. Using 16S rRNA gene amplicon sequencing and untargeted metabolomics, we assessed prokaryotic and chemical diversities in three deep-sea sponge species: Geodia barretti, Stryphnus fortis, and Weberella bursa. Both prokaryotic communities and metabolome varied significantly with depth, which we hypothesized to be the effect of different water masses. Up to 35.5% of microbial ASVs (amplicon sequence variants) showed significant changes with depth while phylum-level composition of host microbiome remained unchanged. The metabolome varied with depth, with relative quantities of known bioactive compounds increasing or decreasing strongly. Other metabolites varying with depth were compatible solutes regulating osmolarity of the cells. Correlations between prokaryotic community and the bioactive compounds in G. barretti suggested members of Acidobacteria, Proteobacteria, Chloroflexi, or an unclassified prokaryote as potential producers.

2023-05-12 | MTBLS1388 | MetaboLights

Project description:Prokaryotic community analysis of the marine sponges Xestospongia muta and Agelas sventres along a depth gradient

| PRJNA453745 | ENA

Geodia

Project description:Molecular Machinery of Gametogenesis in deep-sea Sponges of the genus Geodia

| PRJNA601655 | ENA

soil metagenome

Project description:Soil bacteria communities along soil depth gradient in three regions

| PRJNA347532 | ENA

soil metagenome

Project description:soil fungi communites along soil depth gradient in three regions

| PRJNA347497 | ENA

Project description:Microbial composition and functionality in deep-sea sponges

| PRJNA988918 | ENA

Project description:Microbiota and Diazotrophs associated with Stylophora pistillata along a depth gradient

| PRJNA660928 | ENA

Population and molecular responses to warming in Netzelia tuberspinifera – An endemic and sensitive protist from East Asia

Project description:In this study, we measured growth rate of Netzelia tuberspinifera(basionym Difflugia tuberspinifera) under different temperatures and revealed the molecular mechanisms of temperature adaptation based on the transcriptomics along a temperature gradient (15, 25 and 35 °C). This study can provide a reference for in-depth study on testate amoebae in future researches.

2021-11-11 | GSE165834 | GEO

Project description:Stylophora depth gradient transcriptome

| PRJNA594115 | ENA

Project description:Microbiome composition of deep sea sponges in the Campos Basin, Brazil

| PRJNA930637 | ENA