Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bacterial community in the solid and liquid wastes of Mizoram, India

PROVIDER: PRJNA454104 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7079871_1.fastq.gz	Fastqsanger.gz
	SRR7079871_2.fastq.gz	Fastqsanger.gz
	SRR7079872_1.fastq.gz	Fastqsanger.gz
	SRR7079872_2.fastq.gz	Fastqsanger.gz
	SRR7079873_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Identification and development of DNA methylation biomarkers for Stomach cancers prevalent in Mizoram, India

Project description:Whole genome DNA methylation profiling of stomach cancer in patients from Mizoram, India. The Illumina Infinium 450k Human DNA methylation Beadchip was used to screen the entire DNA methylation profiles across approximately 485,577 CpGs in matched stomach cancer samples. Samples included 12 paired samples (12 cancer and 12 normal).

2021-07-01 | GSE164988 | GEO

Project description:Apple wastes liquid fertilizer

| PRJNA1138972 | ENA

solid waste metagenome

Project description:Municipal Solid wastes Metagenome

| PRJNA259818 | ENA

solid waste metagenome

Project description:Municipal Solid wastes Metagenome

| PRJNA260373 | ENA

Application of BiodegPhyloChip for expression profiling of functional genes from diverse contaminated habitats

Project description:Understanding the bacterial community structure, and their functional analysis for active bioremediation process is essential to design better and cost effective strategies. Microarray analysis enables us to simultaneously study the functional and phylogenetic markers of hundreds of microorganisms which are involved in active bioremediation process in an environment. We have previously described development of a hybrid 60-mer multibacterial microarray platform (BiodegPhyloChip) for profiling the bacterial communities and functional genes simultaneously in environments undergoing active bioremediation process (Pathak et al; Appl Microbiol Biotechnol,Vol. 90, 1739-1754). The present study involved profiling the status of bacterial communities and functional (biodegradation) genes using the developed 60-mer oligonucleotide microarray BiodegPhyloChip at five contaminated hotspots in the state of Gujarat, in western India. The expression pattern of functional genes (coding for key enzymes in active bioremediation process) at these sites was studied to understand the dynamics of biodegradation in the presence of diverse group of chemicals. The results indicated that the nature of pollutants and their abundance greatly influence the structure of bacterial communities and the extent of expression of genes involved in various biodegradation pathways. In addition, site specific factors also play a pivotal role to affect the microbial community structure as was evident from results of 16S rRNA gene profiling of the five contaminated sites, where the community structure varied from one site to another drastically.

2012-12-01 | GSE38004 | GEO

Cave bacterial diversity

Project description:Metagenomic study of bacterial diversity in Caves of Mizoram, Northeast India

| PRJEB7730 | ENA

Project description:Bacterial community structure in vegetable wastes decomposition leachate

| PRJNA738815 | ENA