Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil fungi from canopy and ground soils in Costa Rica

ABSTRACT: Soil fungi from canopy and ground soils in Costa Rica Raw sequence reads

PROVIDER: PRJNA471738 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7186140_1.fastq.gz	Fastqsanger.gz
	SRR7186140_2.fastq.gz	Fastqsanger.gz
	SRR7186150_1.fastq.gz	Fastqsanger.gz
	SRR7186150_2.fastq.gz	Fastqsanger.gz
	SRR7186160_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 228

Similar Datasets

MTB-Costa Rica

Project description:MTB in Costa Rica prisons

| PRJEB36295 | ENA

Lakes Costa Rica

Project description:Lakes Costa Rica 18S communities

| PRJEB37517 | ENA

Costa Rica subduction zone

Project description:Costa Rica subduction zone Metagenome

| PRJNA799781 | ENA

Costa Rica subduction zone

Project description:Costa Rica subduction zone Targeted loci environmental

| PRJNA797441 | ENA

Serum miRNA Seq of Children with Asthma in Costa Rica

Project description:Small RNA was sequenced from banked peripheral blood serum from 1,134 asthmatic children aged 6 to 14 years who participated in the Genetics of Asthma in Costa Rica Study (GACRS). We filtered the participants into high and low bronchodilator response (BDR) quartiles and used DeSeq2 to identify miRNAs with differential expression (DE) in high (N= 277) vs low (N= 278) BDR group. The putative target genes of DE miRNAs were identified, and pathway enrichment analysis was performed. Results: We identified 10 down-regulated miRNAs having odds ratios (OR) between 0.37 and 0.76 for a doubling of miRNA counts and one up-regulated miRNA (OR=2.26) between high and low BDR group. Further, functional annotation of 11 DE miRNAs were performed as well as of two replicated miRs. Target genes of these miRs were enriched in regulation of cholesterol biosynthesis by SREBPs, ESR-mediated signaling, G1/S transition, RHO GTPase cycle, and signaling by TGFB family pathways.

2023-10-09 | GSE244573 | GEO

Phytopathogens from Costa Rica

Project description:Phytopathogens from Costa Rica Genome sequencing and assembly

| PRJNA898399 | ENA

Costa Rica Margin Subseafloor Biosphere

Project description:Costa Rica Margin Subseafloor Microbial Community Analysis

| PRJEB11766 | ENA

Characterization of expression quantitative trait loci in extensively phenotyped pedigrees from Colombia and Costa Rica

Project description:The observation that variants regulating gene expression (expression quantitative trait loci, eQTL) are at a high frequency among SNPs associated with complex traits has made the genome-wide characterization of gene expression an important tool in genetic mapping studies of such traits. As part of a study to identify genetic loci contributing to bipolar disorder and a wide range of BP-related quantitative traits in members of 26 pedigrees from Costa Rica and Colombia, we measured gene expression in lymphoblastoid cell lines derived from 786 pedigree members. The study design enabled us to comprehensively reconstruct the genetic regulatory network in these families, provide estimates of heritability, identify eQTL, evaluate missing heritability for the eQTL, and quantify the number of different alleles contributing to any given locus.

2016-07-01 | GSE82042 | GEO

Costa Rica`s Freshwater Lakes

Project description:Costa Rica`s Freshwater Lakes Raw sequence reads

| PRJNA886742 | ENA

Lago Cote, Alajuela, Costa Rica

Project description:Lago Cote, Alajuela, Costa Rica Raw sequence reads

| PRJNA880862 | ENA