Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Egretta garzetta

ABSTRACT: Viral metagenome in feces from wild egrets in China

PROVIDER: PRJNA471978 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7288010_1.fastq.gz	Fastqsanger.gz
	SRR7288010_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Egretta garzetta

Project description:16S rRNA gene of bacteria in egretta garzetta feces Raw sequence reads

| PRJNA1083344 | ENA

The complete mitochondrial genome sequence of the little egret (Egretta garzetta).

Project description:Many phylogenetic questions in the Ciconiiformes remain unresolved and complete mitogenome data are urgently needed for further molecular investigation. In this work, we determined the complete mitogenome sequence of the little egret (Egretta garzetta). The genome was 17,361 bp in length and the gene organization was typical of other avian mtDNA. In protein-coding genes (PCGs), a C insertion was found in ND3, and COIII and ND4 terminated with incomplete stop codons (T). tRNA-Val and tRNA-Ser (AGY) were unable to fold into canonical cloverleaf secondary structures because they had lost the DHU arms. Long repetitive sequences consisting of five types of tandem repeats were found at the 3' end of Domain III in the control region. A phylogenetic analysis of 11 species of Ciconiiformes was done using complete mitogenome data and 12 PCGs. The tree topologies obtained with these two strategies were identical, which strongly confirmed the monophyly of Ardeidae, Threskiorothidae and Ciconiidae. The phylogenetic analysis also revealed that Egretta was more closely related to Ardea than to Nycticorax in the Ardeidae, and Platalea was more closely related to Threskiornis than to Nipponia in the Threskiornithidae. These findings contribute to our understanding of the phylogenetic relationships of Ciconiiformes based on complete mitogenome data.

| S-EPMC4530654 | biostudies-literature

Egretta garzetta

Project description:Egretta garzetta Genome sequencing and assembly

| PRJNA232959 | ENA

Egretta garzetta

Project description:Egretta garzetta overview

| PRJNA245248 | ENA

Egretta garzetta

Project description:Egretta garzetta

| PRJNA958768 | ENA

Egretta garzetta

Project description:Egretta garzetta Genome sequencing

| PRJNA309350 | ENA

Cervus canadensis

Project description:Viral metagenome in feces from wild elks in China

| PRJNA471930 | ENA

Anser anser

Project description:Viral metagenome in feces from wild geese in China

| PRJNA471976 | ENA

Olfactory epithelium transcriptomes of the Nycticorax nycticorax and Egretta garzetta

Project description:To understand the expression leves of the olfactory receptor genes, We sequenced transcriptomes of 12 olfactory epithelium samples of the Nycticorax nycticorax and Egretta garzetta.

2022-05-16 | GSE197206 | GEO

Spatial ecology of little egret (<i>Egretta garzetta</i>) in Hong Kong uncovers preference for commercial fishponds.

Project description:Many natural wetlands have been converted to human-influenced wetlands. In some instances, human-influenced wetlands could provide complementary habitats for waterbirds, compensating for the loss of natural wetlands. Inner Deep Bay in Hong Kong is composed of both natural and human-influenced wetlands and is under immense development pressure. From an ecology perspective, we need to understand if different wetland types play the same ecological role. To achieve this, we tracked nine little egrets (Egretta garzetta) using GPS loggers for 14 months to study their spatial ecology, home range, movement and habitat use. We found that over 88% of the home range of all individuals comprised of wetlands (commercial fishponds, mangrove, gei wai, channel, and intertidal mudflat). Among these wetland types, nearly all (seven of nine) individuals preferred commercial fishponds over other habitats in all seasons. Little egrets exhibited seasonal movement and habitat use among seasons, with largest home range, greatest movement, and most frequent visits to commercial fishponds in winter compared to spring and autumn. Our results highlight the significant role of commercial fishponds, providing a feeding ground for little egrets. However, other wetland types cannot be ignored, as they were also used considerably. These findings underscore the importance of maintaining a diversity of wetland types as alternative foraging and breeding habitats.

| S-EPMC7485483 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data