Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Egretta garzetta

ABSTRACT: Viral metagenome in feces from wild egrets in China

PROVIDER: PRJNA471978 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7288010_1.fastq.gz	Fastqsanger.gz
	SRR7288010_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Egretta garzetta

Project description:16S rRNA gene of bacteria in egretta garzetta feces Raw sequence reads

| PRJNA1083344 | ENA

The complete mitochondrial genome sequence of the little egret (Egretta garzetta).

Project description:Many phylogenetic questions in the Ciconiiformes remain unresolved and complete mitogenome data are urgently needed for further molecular investigation. In this work, we determined the complete mitogenome sequence of the little egret (Egretta garzetta). The genome was 17,361 bp in length and the gene organization was typical of other avian mtDNA. In protein-coding genes (PCGs), a C insertion was found in ND3, and COIII and ND4 terminated with incomplete stop codons (T). tRNA-Val and tRNA-Ser (AGY) were unable to fold into canonical cloverleaf secondary structures because they had lost the DHU arms. Long repetitive sequences consisting of five types of tandem repeats were found at the 3' end of Domain III in the control region. A phylogenetic analysis of 11 species of Ciconiiformes was done using complete mitogenome data and 12 PCGs. The tree topologies obtained with these two strategies were identical, which strongly confirmed the monophyly of Ardeidae, Threskiorothidae and Ciconiidae. The phylogenetic analysis also revealed that Egretta was more closely related to Ardea than to Nycticorax in the Ardeidae, and Platalea was more closely related to Threskiornis than to Nipponia in the Threskiornithidae. These findings contribute to our understanding of the phylogenetic relationships of Ciconiiformes based on complete mitogenome data.

| S-EPMC4530654 | biostudies-literature

Egretta garzetta

Project description:Egretta garzetta overview

| PRJNA245248 | ENA

Egretta garzetta

Project description:Egretta garzetta

| PRJNA958768 | ENA

Egretta garzetta

Project description:Egretta garzetta Genome sequencing and assembly

| PRJNA232959 | ENA

Egretta garzetta

Project description:Egretta garzetta Genome sequencing

| PRJNA309350 | ENA

Anser anser

Project description:Viral metagenome in feces from wild geese in China

| PRJNA471976 | ENA

Cervus canadensis

Project description:Viral metagenome in feces from wild elks in China

| PRJNA471930 | ENA

Olfactory epithelium transcriptomes of the Nycticorax nycticorax and Egretta garzetta

Project description:To understand the expression leves of the olfactory receptor genes, We sequenced transcriptomes of 12 olfactory epithelium samples of the Nycticorax nycticorax and Egretta garzetta.

2022-05-16 | GSE197206 | GEO

Health risk assessment by toxic metals in little egrets (<i>Egretta garzetta</i>) and food chain contaminations.

Project description:This study analysed heavy metals from little egret (Egretta garzetta). Egret's Eggs, egg shells, food (fish and insects), blood, meat samples (thigh, liver, and chest), water, soil and sediments samples were collected from the two selected sites of the study area. Samples were analysed on flame atomic absorption spectrometer after acid digestion. Detected metals were found almost inline of concentrations when compared with the both sites. Among detected metals Mn was found higher in concentration (µg/g) i.e. 18.509 followed by Zn i.e. 9.383, Ni, Cu, Pb and Cd. Sediment exhibited higher levels (µg/g) of metals (25.061) followed by the meat (19.044) egrets food (18.825), excreta (16.26), blood serums (4.577), eggs (3.626) and water samples (2.432).The level of metals in sediments of the study are showed environmental concerns. Health risks were also investigated that were compared to guidelines of WHO and FAO threshold limits. It was found a marginal health risk to life through detected metals. This study revealed that little egret are good bio-indicator for the screening and investigation of contaminates presence in the environment.

| S-EPMC8716899 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data