Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: vaginal bacteria Raw sequence reads

PROVIDER: PRJNA482736 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7589760.fastq.gz	Fastqsanger.gz
	SRR7589770.fastq.gz	Fastqsanger.gz
	SRR7589780.fastq.gz	Fastqsanger.gz
	SRR7589790.fastq.gz	Fastqsanger.gz
	SRR7589761.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

bovine metagenome

Project description:Bovine Uterine and Vaginal Lavage Bacteria Raw sequence reads

| PRJNA382146 | ENA

MAGE-seq E. coli primary sigma factor RpoD amplicon high-throughput genotyping

Project description:Genotyping of RpoD mutants via amplicon sequencing from the following manuscript: \\"Systematic dissection of σ70 sequence diversity and function in bacteria\\" by Park and Wang (2020). Includes raw sequencing reads from samples from MAGE-seq single codon saturation mutagenesis and high-throughput fitness competition experiment as well as the RpoD ortholog mutants generated through recombineering and CRISPR selection.

2022-06-06 | E-MTAB-9103 | biostudies-arrayexpress

High-throughput miRNA sequencing and identification of biomarkers for forensically relevant biological fluids

Project description:In this study, small RNAs were isolated from individual donations of eight forensically relevant biological fluids (blood, semen, vaginal fluid, menstrual blood, saliva, urine, feces, and perspiration) and subjected to next generation sequencing using the Illumina® Hi-Seq platform. Sequencing reads were aligned and annotated against miRbase release 21, resulting in a list of miRNAs and their relative expression levels for each sample analyzed. Body fluids with high bacterial loads (vaginal fluid, saliva, and feces) yielded relatively low annotated miRNA counts, likely due to oversaturation of small RNAs from the endogenous bacteria. Both body-fluid specific and potential normalization miRNAs were identified for further analysis as potential body fluid identification tools for each body fluid.

2016-08-20 | GSE85830 | GEO

High-throughput miRNA sequencing and identification of biomarkers for forensically relevant biological fluids

Project description:In this study, small RNAs were isolated from individual donations of eight forensically relevant biological fluids (blood, semen, vaginal fluid, menstrual blood, saliva, urine, feces, and perspiration) and subjected to next generation sequencing using the IlluminaÂ® Hi-Seq platform. Sequencing reads were aligned and annotated against miRbase release 21, resulting in a list of miRNAs and their relative expression levels for each sample analyzed. Body fluids with high bacterial loads (vaginal fluid, saliva, and feces) yielded relatively low annotated miRNA counts, likely due to oversaturation of small RNAs from the endogenous bacteria. Both body-fluid specific and potential normalization miRNAs were identified for further analysis as potential body fluid identification tools for each body fluid. 32 samples - 3-5 replicates of each human biological fluid: venous blood, urine, semen (normal and vasectomized), vaginal secretions, menstrual secretions, perspiration, feces, saliva

2016-08-20 | E-GEOD-85830 | biostudies-arrayexpress

Vaginal microbiome

Project description:Vaginal microbiome Raw sequence reads

| PRJNA888448 | ENA

vaginal secretion

Project description:vaginal secretion Raw sequence reads

| PRJNA1159925 | ENA

Vaginal microbiota

Project description:Vaginal microbiota Raw sequence reads

| PRJNA1165462 | ENA

vagina

Project description:vaginal secretion Raw sequence reads