Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression profilings of fission yeast strains

ABSTRACT: Expression profilings of fission yeast strains

PROVIDER: PRJNA489701 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7798692.fastq.gz	Fastqsanger.gz
	SRR7798693.fastq.gz	Fastqsanger.gz
	SRR7798694.fastq.gz	Fastqsanger.gz
	SRR7798695.fastq.gz	Fastqsanger.gz
	SRR7798696.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Expression profilings of fission yeast strains (NETSEQ data set)

Project description:Expression profilings of fission yeast strains (NETSEQ data set)

| PRJNA433965 | ENA

Expression profilings of fission yeast strains (RNA-seq data set)

Project description:Expression profilings of fission yeast strains (RNA-seq data set)

| PRJNA413032 | ENA

Expression profilings of fission yeast strains

Project description:We report gene expression profiling in the fission yeast Schizosaccharomyces pombe. We performed high-throughput sequencing of RNA isolated from wild-type, mmi1(W112A) mutant, erh1∆, and mmi1∆ strains. We find that mmi1(W112A) and erh1∆ derepress a shared subset of mmi1-repressed genes during vegetative growth.

2019-01-03 | GSE119605 | GEO

Expression profilings of fission yeast strains (RNA-seq data set)

Project description:We report gene expression profiling in the fission yeast Schizosaccharomyces pombe. We performed high-throughput sequencing of RNA isolated from wild-type, clr6-1, ago1∆, red1∆, rrp6∆, clr4∆, ccr4∆, ccr4∆fep1, wild-type cells treated with an iron chelator (2,2′-bipyridyl; DIP) grown at 30°C or 18°C and ccr4∆fep1 cells treated with DIP at 18C. We find that many stress response genes, transmembrane transporters, and non-coding RNAs are up-regulated in cells cultured at 18°C. Our analyses concluded that Clr4 and Ccr4 are important for controlling transcript levels at 18°C and uncovered a role for iron homeostasis in adaptive genome control.

2018-05-08 | GSE104546 | GEO

Expression profiling of wild-type and set3D fission yeast strains

2012-01-01 | GSE33228 | GEO

Expression profiling of fission yeast strains: wild-type, erh1∆, and ccr4∆

Project description:We report gene expression profiling in the fission yeast Schizosaccharomyces pombe. We performed high-throughput sequencing of RNA isolated from wild-type, erh1∆, and ccr4∆ strains. We find that many meiotic gene containing degradation sequence DSR are expressed in vegetative erh1∆, while these meiotic mRNAs do not increase in ccr4∆, indicating that Erh1 and Ccr4 target different set of genes during vegetative growth.

2016-06-15 | GSE76112 | GEO

Genome wide map of H3K9me2 in fission yeast Schizosaccharomyces pombe.

Project description:Genome wide map of H3K9me2 in 4 different strains of fission yeast Schizosaccharomyces pombe.

2019-01-03 | GSE119604 | GEO

Expression profiling of wild-type and set3D fission yeast strains

Project description:In fission yeast the SET domain protein, Set3p is required for the reliable execution of cytokinesis. To address whether the deletion of the set3 gene might selectively alter expression of cytokinesis genes, expression profiling of wildtype and set3D strains was performed. Wild-type or set3D strains were grown to mid-log phase in YES media and treated with 0.5 mM LatA (or the solvent control, DMSO) for three hours at 30 degrees C. Three biological replicates were performed.

2012-01-01 | E-GEOD-33228 | biostudies-arrayexpress

Genome-wide map of RNA-Seq in fission yeast Schizosaccharomyces pombe

Project description:RNA-Seq from 3 different strains of fission yeast Schizosaccharomyces pombe.

2020-05-26 | GSE148191 | GEO

RNA-SEQ analysis of fission yeast strains mutant for components of SHREC

Project description:This project aims to identify molecular effects of loss of individual SHREC components on fission yeast transcriptional program RNA-seq was utilized to compare transcript levels between wild type, clr1D, clr2D, clr3D, mit1D and chp2D fission yeast

2016-05-06 | GSE73359 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data