Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nar nodule vs root transcriptome-analysis of symbiotic root nodule development

ABSTRACT: nar nodule vs root transcriptome-analysis of symbiotic root nodule development

PROVIDER: PRJNA497890 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

nar nodule vs root transcriptome-analysis of symbiotic root nodule development

Project description:12plex_medicago_2014_02 - nar nodule vs root transcriptome - which are the genes differentially expressed in alfalfa spontaneous (non rhizobium-infected) nodules vs. control roots? - biological material: aeroponically grown cuttings of a Medicago sativa (alfalfa) accession that produces empty nodules when nitrogen-starved. Samples for transcriptome comparison: isolated NAR nodules (10 days post N-starvation) vs. roots of the same plants (pools of 3 roots).

2018-11-01 | GSE121571 | GEO

NODULE INCEPTION recruits the lateral root developmental program for symbiotic nodule organogenesis

Project description:In order to better understand the commonalities and differences in lateral root and nodule development, we compared their organogenesis and correlated this with changes in gene expression. To initiate lateral roots in Medicago truncatula we turned 2-day-old seedlings 135°, before returning them to their original axis of growth, while for nodule initiation we applied droplets of Sinorhizobium meliloti on the susceptibility zone of the root.

2019-09-20 | GSE133612 | GEO

NODULE INCEPTION recruits the lateral root developmental program for symbiotic nodule organogenesis

Project description:NODULE INCEPTION recruits the lateral root developmental program for symbiotic nodule organogenesis

| PRJNA552042 | ENA

Symbiotic Transcriptome profiling of candidate genes in model legume Arachis hypogaea using Next Generation Sequencing Technology (NGS)

Project description:The Goal of this study is to develop NGS derived Arachis hypogaea root-nodule symbiotic Transcriptome Profile (RNAseq).

2018-08-29 | GSE98997 | GEO

Comparative proteomics analysis of root and nodule mitochondria of soybean

Project description:Legumes perform symbiotic nitrogen fixation through rhizobial bacteroids housed in specialised root nodules. The biochemical process is energy‐intensive and consumes a huge carbon source to generate sufficient reducing power. To maintain the symbiosis, malate is supplied by legume nodules to bacteroids as their major carbon and energy source in return for ammonium ions and nitrogenous compounds. To sustain the carbon supply to bacteroids, nodule cells undergo drastic reorganisation of carbon metabolism. Here, a comprehensive quantitative comparison of the mitochondrial proteomes between root nodules and uninoculated roots was performed using data‐independent acquisition proteomics, revealing the modulations in nodule mitochondrial proteins and pathways in response to carbon reallocation. Corroborated our findings with that from the literature, we believe nodules preferably allocate cytosolic phosphoenolpyruvates towards malate synthesis in lieu of pyruvate synthesis, and nodule mitochondria prefer malate over pyruvate as the primary source of NADH for ATP production. Moreover, the differential regulation of respiratory chain‐associated proteins suggests that nodule mitochondria could enhance the efficiencies of complexes I and IV for ATP synthesis. This study highlighted a quantitative proteomic view of the mitochondrial adaptation in soybean nodules.

2024-07-16 | PXD050301 | Pride

Root nodule

Project description:Root nodule Raw sequence reads

| PRJNA664466 | ENA

root nodule metagenome

Project description:root nodule metagenome Metagenomic assembly

| PRJNA1200940 | ENA

root nodule metagenome

Project description:root nodule metagenome Raw sequence reads

| PRJNA820352 | ENA

root nodule metagenome

Project description:root nodule metagenome Raw sequence reads