Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bacillus sp. (in: firmicutes)

ABSTRACT: Genome assemblies of antibiotic resistance carring Bacillus spp. found in facilities producing drinking water for North-West province (South Africa).

PROVIDER: PRJNA498208 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR8923000_1.fastq.gz	Fastqsanger.gz
	SRR8923000_2.fastq.gz	Fastqsanger.gz
	SRR8923001_1.fastq.gz	Fastqsanger.gz
	SRR8923001_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 13

Similar Datasets

Loa loa

Project description:Human eye parasite found in West and Central Africa

| PRJNA43481 | ENA

miRNA Expression Profiles of Premalignant and Malignant Arsenic-Induced Skin Lesions

Project description:Total RNA was purified from keratinocytes isolated from FFPE arsenic-induced skin lesion samples collected from individuals exposed to high concentrations of arsenic exceeding 50 ppb in drinking water in Murshidibad district of West Bengal, India.

2018-06-01 | GSE102892 | GEO

Comparative genomic hybridization by tiling array of Drosophila melanogaster from different geographic locations

Project description:Population samples of Drosophila melanogaster were hybridized to a genomic tiling array: separetely from 2 US localities, 3 Caribbean localities, 1 West Africa (Cameroon) locality and 1 Zimbabwe locality. We replicated each locality 3 times by pooling individual flies for each hybridization experiment replicate.

2010-10-01 | E-MEXP-2667 | biostudies-arrayexpress

Xanthomonas12

Project description:Xanthomonas spp. assemblies

| PRJEB39595 | ENA

RNA to rule them all: Critical steps in Lassa virus ribonucleoparticle assembly and recruitment

Project description:Lassa virus is a negative-strand RNA virus with only four structural proteins that causes periodic outbreaks in West Africa. The nucleoprotein (NP) encapsidates the viral genome, forming the ribonucleoparticles together with the viral RNA and the L protein, which have to be continuously restructured during viral genome replication and transcription. Z protein is important for ribonucleoparticle recruitment, viral particle assembly and budding, and has also been shown to interact with the L protein. However, the interaction of NP, viral RNA and Z is poorly understood. Here, we characterize the interactions between Lassa virus NP, Z and RNA using structural mass spectrometry. We identify the presence of RNA as the driver for disassembly of ring-like NP trimers into monomers to subsequently form higher order assemblies. We locate the interaction site of Z and NP and demonstrate that while NP binds Z independently of the presence of RNA, this interaction is pH-dependent. These data improve our understanding of ribonucleoparticle assembly and recruitment.

2023-12-18 | PXD040186 | Pride

Edi_Djogbenou_bendiocarb_2

Project description:Transcription profiles of three field collections of Anopheles gambiae M molecular form (i.e. Anopheles coluzzii) from West Africa were compared to investigate their phenotypic differences in insecticide resistance. The susceptibility status for the individual samples was unknown but known for their source populations via phenotypic assays performed concurrently with the sample collections.

2013-12-03 | E-MTAB-1889 | biostudies-arrayexpress

Transcriptome profiling of three DDT resistant strains of Anopheles gambiae in Cameroon

Project description:Transcriptome profiling of three DDT resistant strains of Anopheles gambiae in Cameroon (Gare, Messa and Nkolondom- 2 M forms and one S form) compared to the susceptible strain Ngousso (M form) and Kisumu (S form). S-form is distributed across sub-Saharan Africa and breeds mostly in association with rain-dependent pools and temporary puddles. M-form distribution overlaps with that of S-form in West and Central Africa, but the former form is apparently absent east of the Great Rift Valley; it is able to exploit relatively more permanent breeding sites, often closely associated with human activities, such those created by irrigation, rice cultivation and urbanization (Santolamazza et al., 2011).

2013-10-24 | E-MTAB-1382 | biostudies-arrayexpress

Project description:Escherichia spp. and Shigella spp. genome assemblies

| PRJEB45963 | ENA

Edi_Djogbenou_bendiocarb_1

Project description:Transcription profiles of a field collection of Anopheles gambiae M molecular form (i.e. Anopheles coluzzii) from a population from Cote d'Ivoire (West Africa) were compared to two laboratory strains and to a wild caught field strain (all carbamate insecticide susceptible) to investigate their differences in insecticide resistance. Both carbamate-exposed and carbamate-unexposed Cote d'Ivoire samples were compared to each susceptible strain, and also directly to one another (i.e. exposed vs. unexposed).

2013-12-03 | E-MTAB-1903 | biostudies-arrayexpress

Project description:Genomic characterization of ESBL producing Citrobacter species isolated from surface water in North West province, South Africa

| PRJNA928312 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data