Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next-generation sequence analysis of the submerged Iris tectorum in plant culture and in plant-algae co-culture

ABSTRACT: Next-generation sequence analysis of the submerged Iris tectorum in plant culture and in plant-algae co-culture

PROVIDER: PRJNA503565 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8146630.fastq.gz	Fastqsanger.gz
	SRR8146631.fastq.gz	Fastqsanger.gz
	SRR8146632.fastq.gz	Fastqsanger.gz
	SRR8146633.fastq.gz	Fastqsanger.gz
	SRR8146628.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Next-generation sequence analysis of the submerged Iris tectorum in plant culture and in plant-algae co-culture

Project description:We conducted a culture experiment by deeply submerging plants in swine wastewater in culturing Iris tectorum and co-culturing Iris tectorum and Dictyosphaerium sp., and found that the plants grew sub-normal in the plant-microalgae co-culture while the plants were dead after 21 days in the plant culture. We generated a comprehensive RNA-seq dataset from the submerged Iris tectorum leaves in both the plant culture and the plant-microalgae co-culture, aiming at providing information on the response mechanisms of the plants to waterlogging stress. Besides raw reads of the RNA-seq dataset, we used DEseq2 algorithms to detect the differently expressed genes in the plants between the different cultures. Additionally, we performed the plant disease resistance gene analysis for all the differentially expressed genes.

2018-11-03 | GSE122095 | GEO

Iris tectorum

Project description:Iris tectorum overview

| PRJNA738219 | ENA

Limitations of a submerged culture system

Project description:Limitations of a submerged culture system

| PRJNA834644 | ENA

De novo Assembly of Royal Iris (Iris atropurpurea, section Oncocyclus) transcriptome

Project description:Transcriptome sequencing of non-model organisms is valuable resource of the genetic basis of ecological-meaningful traits. The Royal Irises, Iris section Oncocyclus (Iris: Iridaceae, order Asparagales), are a Middle-East group of species in the course of speciation. The species are characterized with extremely large flowers, a huge range of flower colors and a unique pollination system. The Royal Irises, which are a symbol of conservation in the Middle-east, serve as a model for evolutionary processes of speciation and plant ecology. However, there are not sufficient transcriptomic and genomic data for molecular characterization. Thus, it is necessary to generate massive transcript sequences for functional characterization and molecular marker development for the Royal Irises. The Iris transcriptome sequencing provides valuable resource for studying adaptation-associated traits in this non-model plant. Although intensive eco-evolutionary studies, this is the first reported transcriptome for the Royal Irises. The data available from this study will facilitate gene discovery, functional genomic studies and development of molecular markers in irises, and will provide genetic tools for their conservation.

2021-08-18 | GSE121786 | GEO

Bromus tectorum

Project description:Bromus tectorum overview

| PRJNA1013635 | ENA

Leaf of amphibious plant developed under terrestrial or submerged condition

Project description:Proteomics analysis of amphibious plant leaves. Leaves developed under terrestrial or submerged condition were used.

2021-06-15 | PXD024779 | JPOST Repository

The global transcriptional effect of exogenously added butyrolactone I on Aspergillus terreus under submerged culture

Project description:The filamentous fungus Aspergillus terreus is known to produce both industrially and pharmaceutically important secondary metabolites. The objective of this study is to investigate the effect of exogenously added butyrolactone I (BI) on the submerged culture of A. terreus, especially on the possible regulation of the secondary metabolism on the transcriptional level. In order to elucidate the presumed regulative role of butyrolactone I, a large-scale microarray gene expression study was designed and conducted with an industrially utilised A. terreus strain MUCL38669. A. terreus MUCL38669 was cultured in secondary metabolism inducing submerged conditions for nine days, where butyrolactone I was added at the beginning of the growth phase (at 24 hours p.i.), in the middle of the growth phase (at 96 hours p.i.) or in the late growth phase (at 120 hours p.i.), in addition to the control culture where no exogenous butyrolactone I was added. To obtain comprehensive gene expression profiles over the whole culture time, samples were taken at six time points: 24 hours, 48 hours, 96 hours, 120 hours, 144 hours and 216 hours post inoculation.

2017-05-08 | GSE93552 | GEO

Bromus tectorum

Project description:Bromus tectorum Genome sequencing and assembly

| PRJNA1172708 | ENA

Bromus tectorum

Project description:Bromus tectorum alternate assembly genome sequencing

| PRJNA1120475 | ENA

Bromus tectorum

Project description:Bromus tectorum Transcriptome or Gene expression

| PRJNA1013292 | ENA