Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

3'-TARGET-seq: a novel method for high-sensitivity single-cell mutational analysis and parallel high throughput RNA-sequencing [Figures 5 and 6, Figure S7]

ABSTRACT: 3'-TARGET-seq: a novel method for high-sensitivity single-cell mutational analysis and parallel high throughput RNA-sequencing [Figures 5 and 6, Figure S7]

PROVIDER: PRJNA503903 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8159850.fastq.gz	Fastqsanger.gz
	SRR8159860.fastq.gz	Fastqsanger.gz
	SRR8159870.fastq.gz	Fastqsanger.gz
	SRR8159880.fastq.gz	Fastqsanger.gz
	SRR8159890.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 2798

Similar Datasets

3'-TARGET-seq: a novel method for high-sensitivity single-cell mutational analysis and parallel high throughput RNA-sequencing [Figures 5 and 6, Figure S7]

Project description:We developed 3'-TARGET-seq, a single-cell genotyping and RNA-seq method, which allows accurate detection of multiple mutations within single-cells from genomic and coding DNA in parallel with high throughput 3'-biased whole transcriptome analysis, providing a powerful tool to link transcriptional and genetic tumor heterogeneity. Single cell whole transcriptome sequencing of 2798 Lineage-CD34+ HSPC (Hematopoietic Stem and Progenitor Cells) from patients with JAK2-V617F mutant myelofibrosis and normal controls using 3'-TARGET-seq reveals distinct molecular signatures associated with the presence of somatic mutations in single cells as well as distinct transcriptional profiles of WT cells from patient samples as compared with normal controls.

2019-02-11 | GSE122198 | GEO

TARGET-seq: novel method for single-cell mutational analysis and parallel RNA-sequencing [validation in cell lines Figure 2 and Figure S3]

Project description:TARGET-seq: novel method for single-cell mutational analysis and parallel RNA-sequencing [validation in cell lines Figure 2 and Figure S3]

| PRJNA415204 | ENA

S7, E7 peptide action on BMSCs

Project description:Pro-vascular differentiation and adhesion of BMSCs by S7 and E7 peptides

2024-09-23 | GSE246630 | GEO

S7, E7 peptide action on EPCs

Project description:Pro-vascular differentiation and adhesion of EPCs by S7 and E7 peptides

2024-09-23 | GSE246629 | GEO

TARGET-seq: novel method for single-cell mutational analysis and parallel RNA-sequencing [validation in cell lines; Figure 2 and Figure S3]

Project description:We developed TARGET-seq, a single-cell genotyping and RNA-seq method, which allows accurate detection of multiple mutations within single-cells from genomic and coding DNA in parallel with whole transcriptome analysis, providing a powerful tool to link transcriptional and genetic tumor heterogeneity. Single cell whole transcriptome analysis of JURKAT, SET2 and HSPCs using SMART-seq+, mRNA targeting (tSMARTseq) or TARGET-seq reveals very good correlations between methods.

2019-02-11 | GSE105451 | GEO

Fictibacillus sp. S7 strain:S7

Project description:Fictibacillus sp. S7 strain:S7 Genome sequencing and assembly

| PRJNA474048 | ENA

Mutational signatures

Project description:Mutational signatures

| PRJEB60585 | ENA

TARGET-seq: novel method for single-cell mutational analysis and parallel RNA-sequencing

Project description:TARGET-seq: novel method for single-cell mutational analysis and parallel RNA-sequencing

| PRJNA415199 | ENA

TARGET-seq: novel method for single-cell mutational analysis and parallel RNA-sequencing

Project description:This SuperSeries is composed of the SubSeries listed below.