Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shewanella frigidimarina strain:KCCM 41815

ABSTRACT: Shewanella frigidimarina strain:KCCM 41815 Genome sequencing and assembly

PROVIDER: PRJNA504719 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	RKKC01.dat.gz	Other
	RKKC01.fasta.gz	Fasta.gz
	RKKC01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

Shewanella frigidimarina strain:KCTC 23109

Project description:Shewanella frigidimarina strain:KCTC 23109 Genome sequencing and assembly

| PRJNA504723 | ENA

Shewanella frigidimarina strain:Ag06-30

Project description:Shewanella sp. genome sequencing and assembly

| PRJNA308795 | ENA

Paenibacillus chitinolyticus strain:KCCM 41400

Project description:Paenibacillus chitinolyticus strain:KCCM 41400 Genome sequencing and assembly

| PRJNA427089 | ENA

Enterococcus faecium strain:KCCM 12118

Project description:Enterococcus faecium strain:KCCM 12118 Genome sequencing and assembly

| PRJNA680824 | ENA

Bacillus mycoides strain:KCCM 40260

Project description:Bacillus mycoides strain:KCCM 40260 Genome sequencing and assembly

| PRJNA427084 | ENA

Streptomyces galbus strain:KCCM 41354

Project description:Streptomyces galbus strain:KCCM 41354 Genome sequencing and assembly

| PRJNA259693 | ENA

Alkalicoccobacillus gibsonii strain:KCCM 41407

Project description:Alkalicoccobacillus gibsonii strain:KCCM 41407 Genome sequencing and assembly

| PRJNA695122 | ENA

Shewanella oneidensis MR-1 etrA deletion mutant strain expression profiling determines fine-tuning regulatory role in anaerobic metabolism

Project description:Comparisson of expression profiling of a etrA deletion mutant strain (experimental sample) with that of the wild type Shewanella oneidensis MR-1 strain to assess global direct/indirect genetic regulation EtrA in Shewanella oneidensis MR-1 shares 73.6% and 50.8% amino acid sequence identity with the oxygen-sensing regulator Fnr in E. coli and Anr in Pseudomonas aeruginosa, respectively; however, its regulatory role of anaerobic metabolism in Shewanella spp. is complex and not well understood. Whole-genome expression profiling using a etrA gene deletion mutant as the experimental sample and the wild type strain as the reference, determine that EtrA fine-tunes the expression of genes involved in various anaerobic metabolic pathways, including nitrate, fumarate and dimethyl sulfoxide reduction. Moreover, genes involved in prophage activation and and genes implicated in aerobic metabolism were also differentially expressed. In contrast to previous studies that attributed a minor regulatory role to EtrA in Shewanella spp., this study demonstrates that EtrA acts as a global transcriptional regulator and cofers physiological advantages to the strain under certain growth conditions.

2011-01-29 | GSE26935 | GEO

Shigella boydii strain:KCCM 41690

Project description:Shigella boydii strain:KCCM 41690 Genome sequencing

| PRJNA553274 | ENA

Lactiplantibacillus paraplantarum strain:KCCM 11826P

Project description:Lactiplantibacillus paraplantarum strain:KCCM 11826P Genome sequencing

| PRJNA800250 | ENA