Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shewanella frigidimarina strain:KCTC 23109

ABSTRACT: Shewanella frigidimarina strain:KCTC 23109 Genome sequencing and assembly

PROVIDER: PRJNA504723 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	RKKE01.dat.gz	Other
	RKKE01.fasta.gz	Fasta.gz
	RKKE01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

Shewanella japonica strain:KCTC 12235

Project description:Shewanella japonica strain:KCTC 12235 Genome sequencing and assembly

| PRJNA482218 | ENA

Shewanella japonica strain:KCTC 22435

Project description:Shewanella japonica strain:KCTC 22435 Genome sequencing and assembly

| PRJNA380174 | ENA

Shewanella seohaensis strain:KCTC 23556

Project description:Shewanella seohaensis strain:KCTC 23556 Genome sequencing

| PRJNA882637 | ENA

Expression analysis of strains Streptococcus pneumoniae KCTC 5080T, Streptococcus mitis KCTC 3556T, Streptococcus oralis KCTC 13048T, and Streptococcus pseudopneumoniae CCUG 49455T

Project description:Investigation of whole genome gene expression level changes in S. pneumoniae KCTC 5080T, S. mitis KCTC 3556T, S. oralis KCTC 13048T, and S. pseudopneumoniae CCUG 49455T. This proves that transcriptional profiling can facilitate in elucidating the genetic distance between closely related strains. A one chip study using total RNA recovered from S. pseudopneumoniae CCUG 49455T with three strain. For the the transcriptome of S. pseudopneumoniae CCUG 49455T was analyzed using the S. pneumoniae R6 microarray platform and compared with those of S. pneumoniae KCTC 5080T, S. mitis KCTC 3556T, and S. oralis KCTC 13048T strains.

2012-04-26 | E-GEOD-37539 | biostudies-arrayexpress

Shewanella frigidimarina strain:KCCM 41815

Project description:Shewanella frigidimarina strain:KCCM 41815 Genome sequencing and assembly

| PRJNA504719 | ENA

Expression analysis of strains Streptococcus pneumoniae KCTC 5080T, Streptococcus mitis KCTC 3556T, Streptococcus oralis KCTC 13048T, and Streptococcus pseudopneumoniae CCUG 49455T

2012-04-27 | GSE37539 | GEO

Shewanella frigidimarina strain:Ag06-30

Project description:Shewanella sp. genome sequencing and assembly

| PRJNA308795 | ENA

Shewanella dokdonensis strain:DSM 23626=KCTC 22898

Project description:Shewanella dokdonensis strain:DSM 23626=KCTC 22898 Genome sequencing

| PRJNA728757 | ENA

Shewanella oneidensis MR-1 etrA deletion mutant strain expression profiling determines fine-tuning regulatory role in anaerobic metabolism

Project description:Comparisson of expression profiling of a etrA deletion mutant strain (experimental sample) with that of the wild type Shewanella oneidensis MR-1 strain to assess global direct/indirect genetic regulation EtrA in Shewanella oneidensis MR-1 shares 73.6% and 50.8% amino acid sequence identity with the oxygen-sensing regulator Fnr in E. coli and Anr in Pseudomonas aeruginosa, respectively; however, its regulatory role of anaerobic metabolism in Shewanella spp. is complex and not well understood. Whole-genome expression profiling using a etrA gene deletion mutant as the experimental sample and the wild type strain as the reference, determine that EtrA fine-tunes the expression of genes involved in various anaerobic metabolic pathways, including nitrate, fumarate and dimethyl sulfoxide reduction. Moreover, genes involved in prophage activation and and genes implicated in aerobic metabolism were also differentially expressed. In contrast to previous studies that attributed a minor regulatory role to EtrA in Shewanella spp., this study demonstrates that EtrA acts as a global transcriptional regulator and cofers physiological advantages to the strain under certain growth conditions.

2011-01-29 | GSE26935 | GEO

Transcriptional targets of Shewanella oneidensis HnoC (SO_2540)

Project description:To identify the transcriptional targets of the DNA-binding response regulator HnoC (SO_2540), mRNA transcript levels in Shewanella oneidensis were measured using whole genome microarray analysis. Transcript levels were compared between WT Shewanella oneidensis and a hnoC deletion strain.

2013-11-01 | GSE44689 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data