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Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to lettuce media

ABSTRACT: Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to lettuce media

PROVIDER: PRJNA507645 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8264700.fastq.gz	Fastqsanger.gz
	SRR8264701.fastq.gz	Fastqsanger.gz
	SRR8264693.fastq.gz	Fastqsanger.gz
	SRR8264694.fastq.gz	Fastqsanger.gz
	SRR8264695.fastq.gz	Fastqsanger.gz

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Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to lettuce media

Project description:Summary: Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to lettuce medium (LM) and lettuce root exudates (LX) to minimal medium (MM). Purpose: Salmonella mRNA profile, when grown in different media was compared to minimal medium to reveal environment specific transcriptional changes. Methods: mRNA profiles were generated using Illumina HiSeq in triplicates. The sequences were analysed using Bowtie2 followed by Cufflinks.

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Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to soil media

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Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to tomato media

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Project description:We mapped the genome-wide binding of C-terminally FLAG-tagged AraC in S. enterica subsp. enterica serovar Typhimurium strain 14028s using ChIP coupled with deep sequencing (ChIP-seq). We identified five putative target loci for AraC: upstream of araB/araC, araE, araJ, STM14_0178, and within sseD.

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