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Single Cell RNA sequence data from a human ovarian cancer sample

ABSTRACT: Single Cell RNA sequence data from a human ovarian cancer sample

PROVIDER: PRJNA508840 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8289920_1.fastq.gz	Fastqsanger.gz
	SRR8289920_2.fastq.gz	Fastqsanger.gz
	SRR8289930_1.fastq.gz	Fastqsanger.gz
	SRR8289930_2.fastq.gz	Fastqsanger.gz
	SRR8289940_1.fastq.gz	Fastqsanger.gz

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Single Cell RNA sequence data from a human ovarian cancer sample

Project description:Purpose: Investigate cellular heterogeneity in a fresh human ovarian cancer tissue sample Methods: Enzymatic digestion of fresh tissue sample collected from the operating room to produce single cell suspension. Cells were labelled with fluorescent antibodies to CD3, CD14, CD19, CD20, CD56 and FACS sorted to remove immune cells. The negative population was used for sequencing. Single cells were processed using the Fluidigm C1 Chip to generate barcoded cDNA for each cell. Amplifed cDNA was sequenced using an Illumina HiSeq 2500 machine. Results: Single cell RNA sequence data was obtained for 92 cells and a "bulk" sample of 1000 cells. 26 cells were removed from analysis due to quality control standards. The remaining 66 cells and the bulk sample were analyzed. Conclusion: Single cell RNA sequence analysis reveals heterogeneity in gene expression in cells harvested from a high grade ovarian serous cancer

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