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RNA-Seq of Arabidopsis Col-0 and sid2 seedlings treated with L-Glu and urea

ABSTRACT: RNA-Seq of Arabidopsis Col-0 and sid2 seedlings treated with L-Glu and urea

PROVIDER: PRJNA509417 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR8311260.fastq.gz	Fastqsanger.gz
	SRR8311261.fastq.gz	Fastqsanger.gz
	SRR8311262.fastq.gz	Fastqsanger.gz
	SRR8311253.fastq.gz	Fastqsanger.gz
	SRR8311263.fastq.gz	Fastqsanger.gz

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RNA-Seq of Arabidopsis Col-0 seedlings treated with L-Glu, urea, SA, and distilled water, and Col-0 and sid2 seedlings treated with L-Glu and urea

Project description:RNA-Seq of Arabidopsis Col-0 seedlings treated with L-Glu, urea, SA, and distilled water, and Col-0 and sid2 seedlings treated with L-Glu and urea

| PRJNA509415 | ENA

RNA-Seq of Arabidopsis Col-0 and sid2 seedlings treated with L-Glu and urea

Project description:Plant resistance inducers (PRIs) are compounds that protect crops from diseases by activating plant immunity. The exogenous treatment with glutamate (Glu), an important amino acid for living organisms, was shown to induce resistance against fungal pathogen in rice and tomato. To understand the molecular mechanism of Glu-induced immunity, we developed a model system using Arabidopsis thaliana. Here, we found that exogenous treatment with Glu to Arabidopsis enhances resistance against Pseudomonas syringae pv. tomato DC3000 and Colletotrichum higginsianum. Consistently, transcriptome analyses of Arabidopsis seedlings treated with Glu showed that Glu significantly induces the expression of wound, defense, and stress related genes. Interestingly, Glu activates the expression of pathogen or damage associated molecular patterns (PAMP or DAMP)–inducible genes at much later time points than PAMP/DAMPs normally do. Moreover, expression of Glu-inducible genes does not require known components of PAMP receptor complex, glutamate receptors, salicylic acid-biosynthesis enzyme, or glutamate decarboxylase. In addition, Glu also enhances PAMP-inducible immune responses, such as production of reactive oxygen species and mitogen-activated protein kinase activation. These results show that Glu activates PAMP/DAMP-triggered immunity signaling pathway in a novel manner.

2019-12-06 | GSE123621 | GEO

RNA-Seq of Arabidopsis Col-0 seedlings treated with L-Glu, urea, SA, and distilled water.

2019-12-06 | GSE123620 | GEO

RNA-Seq of Arabidopsis Col-0 seedlings treated with L-Glu, urea, SA, and distilled water.

Project description:RNA-Seq of Arabidopsis Col-0 seedlings treated with L-Glu, urea, SA, and distilled water.

| PRJNA509414 | ENA

RNA-Seq of Arabidopsis Col-0 seedlings treated with L-Glu, urea, SA, and distilled water, and Col-0 and sid2 seedlings treated with L-Glu and urea

Project description:This SuperSeries is composed of the SubSeries listed below.

2019-12-06 | GSE123622 | GEO

RNA profiling of Col-0 and vil1-1 1-day-old seedlings in Arabidopsis

Project description:1-day-old seedlings of Col-0 and vil1-1 were performed RNA-Seq to identify differentially expressed genes caused by VIL1 mutation in Arabidopsis

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Gene expression profiling in Col-0 and ein2-5 seedlings under glucose depletion and glucose recovery conditions

Project description:We aimed to compare the differences in gene expression in Col-0 and ein2-5 seedlings under glucose depletion and glucose recovery conditions. Col-0 and ein2-5 seedlings were germinated in liquid 1/2 MS medium without glucose for 4 days and were then treated with or without glucose for 2 hours. mRNA seq was performed to make the comparisons.

2020-12-29 | GSE114505 | GEO

Transcriptome analysis of Arabidopsis seedlings between Col-0 and OE-SAUR41

Project description:Purpose: we used transcriptional profiling to identify differentially expressed genes in Col-0 and OE-SAUR41 seedlings Methods: Total RNA of 5-day-old Arabidopsis roots and the shoot parts were send to Vazyme BIotech Co., Ltd (Nanjing, China) to carry out library construction, Illumina HiSeq sequencing, and bioinformatical analysis. Each sample generated 4 Gb of clean data and contained three biological replicates.

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Project description:Col-0 seedlings were submerged or left in air for 1 h and then RNA-sequencing was performed.

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Transcriptome analysis of Arabidopsis seedlings between Col-0 and saur41/4071/72

Project description:Purpose: we used transcriptional profiling to identify differentially expressed genes in Col-0 and saur41/4071/72 seedlings Methods: Total RNA of 5-day-old Arabidopsis roots and the shoot parts were send to Vazyme BIotech Co., Ltd (Nanjing, China) to carry out library construction, Illumina HiSeq sequencing, and bioinformatical analysis. Each sample generated 4 Gb of clean data and contained three biological replicates.

2020-04-29 | GSE134119 | GEO

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