Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shigella flexneri 5a str. M90T isolate:Pasteur Institute

ABSTRACT: Shigella flexneri 5a str. M90T isolate:Pasteur Institute Genome sequencing

PROVIDER: PRJNA510559 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR8921221_1.fastq.gz	Fastqsanger.gz
	SRR8921221_2.fastq.gz	Fastqsanger.gz
	SRR8921222_1.fastq.gz	Fastqsanger.gz
	SRR8921222_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Shigella flexneri 5a

Project description:Shigella flexneri 5a

| PRJNA16047 | ENA

Shigella flexneri 5a str. M90T

Project description:Shigella flexneri 5a str. M90T Genome sequencing and assembly

| PRJNA73131 | ENA

Transcriptomic profiling of HeLa cells infected with Shigella flexneri

Project description:We evaluated the transcriptome changes induced by infection of Hela 229 cells with Shigella flexneri. The sample set consists of a control (mock), total population of infected sample and infected sample sorted into Shigella positive and Shigella negative population.

2017-04-04 | GSE75746 | GEO

The expression profiles analysis of shigella flexneri incubated in rabbit ileum

Project description:To find the alterations of expression profiles of shigella flexneri, we performed DNA chip analysis and proteomic analysis at the same time.

2009-05-22 | GSE12534 | GEO

Dual-transcriptome of Shigella flexneri infecting human HCT116 cells

Project description:Analyse the transcriptionnal changes of human colon epithelial cells (HCT116) associated with Shigella flexneri (M90T) infection and correlated with the bacterial transcriptional program.

2024-12-01 | E-MTAB-14119 | biostudies-arrayexpress

miRNA profiling of human colon cells infected with the bacterium Shigella flexneri

Project description:Overview of microRNA expression changes during Shigella flexneri infection of human colon epithelial cells (HCT116)

2024-12-01 | E-MTAB-14092 | biostudies-arrayexpress

Transcriptional Profile of the Shigella flexneri Response to Berberine

Project description:Berberine is a natural isoquinoline alkaloid found in Chinese medicinal herbs which is active against a variety of microbial infections. To examine the potential effects of berberine on Shigella flexneri, a whole-genome DNA microarray was constructed and transcriptome analysis of the cellular responses of S.flexneri when exposed to Berberine Chloride (BC) was performed.

2012-03-10 | GSE16714 | GEO

Shigella flexneri

Project description:Shigella flexneri Genome sequencing

| PRJNA1040311 | ENA

The expression profiles analysis of a virulence plasmid-cured strain of shigella flexneri

Project description:In this study, we analyzed the expression profiles of a virulence plasmid-cured strain and wild-type strain of shigella flexneri. The results showed that the genes of glp regulon were upregulated in mutant bacteria in stationary phase cultures.

2008-12-22 | GSE12535 | GEO

Expression analysis of Shigella flexneri 2a strain 301

Project description:Investigation of whole genome gene expression to identify overlooked sRNAs and sORFs. Background The completion of numerous genome sequences has introduced an era of whole-genome study. However, many real genes, including small RNAs (sRNAs) and small ORFs (sORFs), are missed in genome annotation. In order to improve genome annotation, we sought to identify novel sRNAs and sORFs in Shigella, the principal etiologic agents of bacillary dysentery or shigellosis. Results Firstly, we identified 64 sRNAs in Shigella which is experimentally validated in other bacteria based on sequence conservation. Secondly, among possible approaches to search for sRNAs, we employed computer-based and tiling array based methods, followed by RT-PCR and northern blots. This allowed us to identify 12 sRNAs in Shigella flexneri strain 301. We also find 29 candidate sORFs. Conclusions This investigation provides an updated and comprehensive annotation of the Shigella genome, increases the expected numbers of sORFs and sRNAs with the corresponding impact on future functional genomics and proteomics studies. Our method can be used for the large scale reannotation of sRNAs and sORFs in any microbe whose genome sequence is available.

2011-06-27 | GSE22800 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data