Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Characterization of Guca2a expressing cells in the mouse intestine

ABSTRACT: Characterization of Guca2a expressing cells in the mouse intestine

PROVIDER: PRJNA526492 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8707950.fastq.gz	Fastqsanger.gz
	SRR8707960.fastq.gz	Fastqsanger.gz
	SRR8707970.fastq.gz	Fastqsanger.gz
	SRR8707951.fastq.gz	Fastqsanger.gz
	SRR8707961.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Characterization of Guca2a expressing cells in the mouse intestine

Project description:We report here the transcriptome of sorted cells from a Guca2a promoter GFP mouse model, positve and negative cells for GFP from 4 different regions of the GI tract, duodenum (top 3cm), jejunum (intermediate small intestine), ileum (bottom 10 cm) and colon +rectum from 3 different mice. This data allows the characterization of the cells expressing Guca2a at the trancriptome level, revealling expression of different cell markers and showing diversity of Guca2a producing cells along the GI tract.

2021-03-01 | GSE128117 | GEO

Characterization of radioresistant epithelial stem cell heterogeneity in the damaged mouse intestine

Project description:The small intestine has a robust regenerative capacity, and various cell types serve as “cells-of-origin” in the epithelial regeneration process after injury. However, how much each population contributes to regeneration remains unclear. Using lineage tracing, we found that Lgr5-expressing cells’ derivatives contained radioresistant ISCs crucial for epithelial regeneration in the damaged intestine after radiation. Single-cell RNA sequencing analysis of Lgr5-derivatives identified primary source of epithelial regeneration in the irradiation damaged intetsine.

2020-05-22 | GSE146783 | GEO

Spatial proteomics mouse intestine

Project description:Alcohol induced damages to teh crypts and villi of mouse small intestine revealed by laser capture microdissection (LCM)-based sample collection, DIA-based untargeted proteomics

2024-05-21 | PXD048687 | Pride

Characterization of radioresistant epithelial stem cell heterogeneity in the damaged mouse intestine

Project description:Characterization of radioresistant epithelial stem cell heterogeneity in the damaged mouse intestine

| PRJNA611954 | ENA

KIT-expressing cells in the mouse fetal liver

Project description:KIT-expressing cells in the mouse fetal liver

| PRJNA1028496 | ENA

Regulation of pyroptosis in radiation induces mouse intestine cells

Project description:Regulation of pyroptosis in radiation induces mouse intestine cells

| PRJNA871879 | ENA

RNA-Seq analysis of mouse small intestine enteroendocrine cells

2015-01-01 | GSE61250 | GEO

Characterization of postnatal mouse adrenal chromaffin cells

Project description:Characterization of postnatal mouse adrenal chromaffin cells

| PRJNA824412 | ENA

RNA-Seq analysis of mouse small intestine enteroendocrine cells

Project description:We generated knock-in mice expressing GFP under the control of the endogenous GIP (Glucose-dependent Insulinotropic Polypeptide) promoter that enable the isolation of a purified population of small intestine K cells. Using RNA-Seq, we comprehensively characterized the transcriptomes of GIP-GFP cells as well as the entire enteroendocrine lineage derived from Neurogenin3 (Ngn3)-expressing progenitors. We interrogated the whole transcriptome of FACS-isolated small intestine GIPGFP cells using high-throughput mRNA sequencing. We also obtained the global gene expression patterns of the entire enteroendocrine cell lineage as well as the non-enteroendocrine cell population, comprising enterocytes, goblet cells and Paneth cells. To achieve this, small intestine epithelial cells from male mice resulting from the breeding of Neurogenin3 (Ngn3)-Cre mice with ROSA26-LoxP-STOP-LoxP-tomato indicator mice were isolated based on Tomato fluorescence and negative staining for CD45. Due to the small cell numbers, we constructed each of the three RNA-Seq libraries (GIPGFP, Ngn3TOMATO, and Ngn3-) using a pool of equal amounts of individual RNA samples without RNA amplification.

2015-01-01 | E-GEOD-61250 | biostudies-arrayexpress

Transcriptomic analysis of mouse BM stromal cells expressing IL7

Project description:Transcriptomic analysis of mouse BM stromal cells expressing IL7

| PRJNA355114 | ENA