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Soil metagenome

ABSTRACT: Nitrogen used efficiency in Integrated rice-based farming system for enhancing climate resilient and profitability in eastern India.

PROVIDER: PRJNA531347 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8863620_1.fastq.gz	Fastqsanger.gz
	SRR8863620_2.fastq.gz	Fastqsanger.gz
	SRR8863615_1.fastq.gz	Fastqsanger.gz
	SRR8863615_2.fastq.gz	Fastqsanger.gz
	SRR8863616_1.fastq.gz	Fastqsanger.gz

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soil metagenome

Project description:Integrated rice based farming system for enhancing climate resilient and profitability in eastern India.

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Project description:Over last decade several studies on oral cancer patients from eastern India have identified alterations in copy numbers in many regions of the chromosome such as 3p21.3, 8q24.21, 9p21, 9p22, 11q13, 11q21-24. However, all these studies employed microsatellite markers to map these CNV regions. This resulted in large map intervals (10-12 megabases) between the adjacent markers studied. As these regions contain a large number of genes, a high resolution CNV map of these regions was necessary to precisely identify novel genes affected by the amplifications and deletions. We thus used custom made Agilent 4X44K oligonucleotide array CGH platform to map the identified CNV regions in a resolution of 3 Kb in oral cancer patients from eastern India.

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Custom array CGH of Oral Squamous Cell Cancer

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Proteomic analysis of Daboia russelli venom samples from Burdwan and Nadia districts of West Bengal, eastern India

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Multiomic analysis revealed the potential role of rumen microbes in heat stress

Project description:<p>Heat stress is an important issue in dairy cattle feeding management affecting summer health and economic efficiency. In recent years, global climate change has led to an increase in atmospheric CO2 content and average daily temperature, making heat stress a major challenge in dairy farming. This experiment combined 16S rDNA sequencing, metagenomic sequencing and metabolomic analysis. In this experiment, 10 cows each of growing heifers, heifers and lactating cows were selected for sample collection in April and August. Ruminal fluid was collected and filtered through gauze, which was immediately transferred to liquid nitrogen prior to macrogenomic, 16S rDNA sequencing and metabolomic analyses.</p>

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Project description:Enhancing Nitrogen Removal Efficiency through Partial Nitrification-Denitrification in the integrated internal circulation aerated reactor: Microbial Evolution.

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Co-cultivating rice plants with Azolla filiculoides modifies root architecture and timing of developmental stages

Project description:Innovative strategies for increasing the yield of rice, the staple food for more than half of the global population, are needed to keep pace with the expected worldwide population increase, and sustainably forefront the challenges posed by climate change. Traditionally, in Southern-East Asian countries, rice farming benefits from the use of Azolla spp., either as green manure or as co-cultivated plants, for the supply of nitrogen. Azolla spp. are ferns that, in virtue of their symbiosis with the nitrogen-fixing cyanobacterium Trichormus azollae, fix atmospheric nitrogen and release it to the environment upon decomposition of their biomass. However, if and to what extent actively growing Azolla plants impact on the development of co-cultivated rice plantlets remains to be understood. To address this point here we employed an experimental model to follow the growth and development of roots and aerial organs of rice seedlings when co-cultivated with Azolla filiculoides. We show that actively growing A. filiculoides plants alter the architecture of the roots, the transcriptome of the roots, and the hormonal profiles of both roots and leaves.

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