Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Rapid metagenomics analysis of EMS vehicles for monitoring pathogen load using nanopore DNA sequencing

PROVIDER: PRJNA545293 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9184442_consensus.fastq.gz	Fastqsanger.gz
	SRR9184443_1.fastq.gz	Fastqsanger.gz
	SRR9184443_2.fastq.gz	Fastqsanger.gz
	SRR9184444_1.fastq.gz	Fastqsanger.gz
	SRR9184444_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Project description:Rapid plant pathogen detection using on-site nanopore sequencing

| PRJNA1063731 | ENA

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

Project description:Manila Bay Monitoring using Metagenomics for Pathogen Detection and Source Tracking

| PRJNA1153485 | ENA

poreFUME paper. Manuscript on bioRxiv: http://biorxiv.org/content/early/2016/08/04/067652

Project description:Rapid resistome mapping using nanopore sequencing

| PRJEB14994 | ENA

Project description:Genomic monitoring of the critically endangered kakapo using targeted nanopore sequencing of environmental DNA

| PRJNA806467 | ENA

Project description:Monitoring earthworm biodiversity using DNA metabarcoding

| PRJNA783879 | ENA

Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana

Project description:In the dry state, orthodox seeds have little antioxidant capacity, relying on reduced glutathione and tocochromanols for antioxidant defences rather than ascorbate or ascorbate peroxidase (APX). Ascorbate is synthesised de novo within a few hours of imbibition resulting in rapid increases in the ascorbate pool in the developing embryo. The knock-on effects of enhanced oxidation on embryo development before and after imbibition remain poorly characterised. A T-DNA insertional mutant line (SAIL_769_H05) line was used in these studies together with vtc2-1 mutants that were originally identified in an ethyl-methanesulfonate (EMS) mutagenesis screen. Expression levels of dry seeds and imbibed seeds of the genotypes Col0, vtc2 (EMS) and vtc2.5 (SAIL_769_H05) were quantified using Illumina RNA-seq technology

2017-07-03 | E-MTAB-5103 | biostudies-arrayexpress

Project description:Automated environmental metagenomics using Oxford Nanopore sequencing

| PRJNA1112790 | ENA

Invasive pathobionts in intestinal microbiome contributes to cancer initiation by counterbalancing epithelial antimicrobial responses A

Project description:Microbiota dysbiosis and mucosa-associated bacteria are involved in colorectal cancer progression. We hypothesized that a time-specific interaction between dysbiotic pathobionts and host responses promote tumor growth. This study aimed to elucidate the dysfunctional host-microbe interplay in colon tumorigenesis by using a time-series metagenomics approach. A transient surge in fecal microbial richness was linked to a unique transcriptome profile in the mouse colon during carcinoma transformation. Monitoring gut microbiome may help identifying the window-of-opportunity to induce tumor regression using bacteria-targeted precision medicine.

2021-11-24 | GSE166030 | GEO

Invasive pathobionts in intestinal microbiome contributes to cancer initiation by counterbalancing epithelial antimicrobial responses B

2021-11-24 | GSE166038 | GEO