Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lichen metagenome

ABSTRACT: Lichens of Gujarat

PROVIDER: PRJNA551228 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9610072.fastq.gz	Fastqsanger.gz
	SRR9610073.fastq.gz	Fastqsanger.gz
	SRR9610074.fastq.gz	Fastqsanger.gz
	SRR9610075.fastq.gz	Fastqsanger.gz
	SRR9610076.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

lichen metagenome

Project description:bacteria associated with lichens Raw sequence reads

| PRJNA351903 | ENA

lichen metagenome

Project description:Microbiomic analysis of bacteria associated with rock tripe lichens in Antarctic regions

| PRJDB13657 | ENA

lichen metagenome

Project description:Microbiomic analysis of bacteria associated with rock tripe lichens from arctic/subarctic areas

| PRJDB14688 | ENA

lichen metagenome

Project description:Microbiomic analysis of bacteria associated with rock tripe lichens from Japan, Guiana and South Africa

| PRJDB15406 | ENA

Lichen Metagenomics

Project description:Metagenomic profiling of crustose lichens and their analysis

| PRJEB12843 | ENA

Cladonia lichen metagenomes

Project description:Reeindeer lichens as potential natural products source

| PRJEB34718 | ENA

Lichen metabolites produced under extreme conditions

Project description:Non-target metabolomics of lichens exposed to extreme environmental conditions such as pressure and ultraviolet light

2023-07-04 | MSV000092339 | MassIVE

Lichen fungal symbionts

Project description:Ascomycete fungi that are symbionts of lichens from the Lecanoromycetes Genome sequencing and assembly

| PRJNA795879 | ENA

GNPS - Lichen metabolites produced under extreme conditions

Project description:Non-target metabolomics of lichens exposed to extreme environmental conditions such as pressure and ultraviolet light

2023-07-04 | MSV000092339 | GNPS

Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.

Project description:Basidiomycete yeasts have recently been reported as stably associated secondary fungal symbionts of many lichens, but their role in the symbiosis remains unknown. Attempts to sequence their genomes have been hampered both by the inability to culture them and their low abundance in the lichen thallus alongside two dominant eukaryotes (an ascomycete fungus and chlorophyte alga). Using the lichen Alectoria sarmentosa, we selectively dissolved the cortex layer in which secondary fungal symbionts are embedded to enrich yeast cell abundance and sequenced DNA from the resulting slurries as well as bulk lichen thallus. In addition to yielding a near-complete genome of the filamentous ascomycete using both methods, metagenomes from cortex slurries yielded a 36- to 84-fold increase in coverage and near-complete genomes for two basidiomycete species, members of the classes Cystobasidiomycetes and Tremellomycetes. The ascomycete possesses the largest gene repertoire of the three. It is enriched in proteases often associated with pathogenicity and harbors the majority of predicted secondary metabolite clusters. The basidiomycete genomes possess ∼35% fewer predicted genes than the ascomycete and have reduced secretomes even compared with close relatives, while exhibiting signs of nutrient limitation and scavenging. Furthermore, both basidiomycetes are enriched in genes coding for enzymes producing secreted acidic polysaccharides, representing a potential contribution to the shared extracellular matrix. All three fungi retain genes involved in dimorphic switching, despite the ascomycete not being known to possess a yeast stage. The basidiomycete genomes are an important new resource for exploration of lifestyle and function in fungal-fungal interactions in lichen symbioses.

| S-EPMC8355462 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data