Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tribolium castaneum experimental evolution

ABSTRACT: Tribolium castaneum experimental evolution

PROVIDER: PRJNA552902 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9647210_1.fastq.gz	Fastqsanger.gz
	SRR9647210_2.fastq.gz	Fastqsanger.gz
	SRR9647220_1.fastq.gz	Fastqsanger.gz
	SRR9647220_2.fastq.gz	Fastqsanger.gz
	SRR9647230_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 120

Similar Datasets

Tribolium castaneum experimental evolution

Project description:We report Illumina-generated RNASeq data of several populations of Tribolium castaneum larvae selected for higher or lower immune priming specificity as well as unselected control populations. From each of these populations, we injected groups of 20 larvae with either one of three bacteria species or left them untreated as controls. Whole body samples were taken 6h after injection and used for RNASeq Analysis.

2019-09-11 | GSE133892 | GEO

Deep sequencing of small RNAs from Tribolium castaneum

Project description:Characterization of miRNAs in red flour beetle Tribolium castaneum by deep sequencing of two different RNA libraries. Sequencing of Tribolium small RNAs from adults and embryos.

2010-12-29 | E-GEOD-26036 | biostudies-arrayexpress

Deep sequencing of small RNAs from Tribolium castaneum

Project description:Characterization of miRNAs in red flour beetle Tribolium castaneum by deep sequencing of two different RNA libraries.

2010-12-29 | GSE26036 | GEO

Tribolium castaneum

Project description:Tribolium castaneum Proteome

| PRJNA257028 | ENA

Tribolium castaneum

Project description:Tribolium castaneum phosphine

| PRJNA297896 | ENA

Enhancer identification and activity evaluation in the red flour beetle, Tribolium castaneum

Project description:Evolution of cis-properties (such as enhancers) often plays an important role in the production of diverse morphology. However, a mechanistic understanding is often limited by the absence of methods to study enhancers in species outside of established model systems. Here, we sought to establish methods to identify and test enhancer activity in the red flour beetle, Tribolium castaneum. To identify possible enhancer regions, we first obtained genome-wide chromatin profiles from various tissues and stages of Tribolium via FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)-sequencing. Comparison of these profiles revealed a distinct set of open chromatin regions in each tissue and stage. Second, we established the first reporter assay system that works in both Drosophila and Tribolium, using nubbin in the wing and hunchback in the embryo as case studies. Together, these advances will be useful to study the evolution of cis-language and morphological diversity in Tribolium and other insects.

2017-10-03 | GSE104495 | GEO

Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum

Project description:Using a tiled whole-genome microarray, we found that 58.2% of Tribolium castaneum genes are maternally loaded into eggs. Comparison of known Drosophila melanogaster maternal genes to our results showed widespread conservation of maternal function with T. castaneum. We also found many T. castaneum genes with previously identified gender or tissue specific expression were also maternally loaded into eggs. The microarray design also allowed the detection of 2315 and 4060 novel transcriptionally active regions greater in length than 100 bp in unfertilized and fertilized T. castaneum eggs, respectively. The primary objective of this study was to identify expressed regions of the Tribolium castaneum genome in unfertilized and fertilized eggs using a whole-genome tiled microarray. The whole RNA of 3 samples of virgin laid eggs and 3 samples of fertilized eggs were compaired.

2013-05-06 | E-GEOD-38245 | biostudies-arrayexpress

Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum

2013-05-06 | GSE38245 | GEO

Tribolium castaneum

Project description:Tribolium castaneum RNAi transcriptome

| PRJNA302304 | ENA

Tribolium castaneum

Project description:Tribolium castaneum ERR knockdown

| PRJNA837364 | ENA