Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Giant barrel sponge (Xestospongia spp.) microbiome Thailand, Curacao, Martinique

PROVIDER: PRJNA554009 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9669780.fastq.gz	Fastqsanger.gz
	SRR9669790.fastq.gz	Fastqsanger.gz
	SRR9669800.fastq.gz	Fastqsanger.gz
	SRR9669810.fastq.gz	Fastqsanger.gz
	SRR9669820.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 73

Similar Datasets

odXesMuta

Project description:Xestospongia muta (giant barrel sponge)

| PRJEB63657 | ENA

odXesMuta1

Project description:Xestospongia muta (giant barrel sponge) genome assembly, odXesMuta1

| PRJEB70765 | ENA

odXesMuta

Project description:Xestospongia muta (giant barrel sponge), genomic and transcriptomic data

| PRJEB63656 | ENA

odXesMuta1 alternate haplotype

Project description:Xestospongia muta (giant barrel sponge) genome assembly, odXesMuta1, alternate haplotype

| PRJEB70766 | ENA

Project description:Shallow Agaricia spp. in Curacao

| PRJNA1120949 | ENA

Xestospongia Microbiome

Project description:Xestospongia Microbiome

| PRJNA476053 | ENA

Spatial sequencing of Foreign body granuloma

Project description:Although macrophage-epithelioid cell (EPC)-giant cell (GC) differentiation is acknowledged in foreign body reaction (FBR), the exact molecular features remain elusive. To discover the molecular profiles of EPC and GC, we analyzed mouse sponge and silk FBRs by integrating single-cell RNA-sequencing (scRNA-seq) and spatial sequencing.

2022-05-17 | GSE203165 | GEO

Single cell 3' RNA sequencing of Foreign body granuloma

2022-05-17 | GSE203099 | GEO

Complete metabolic reconstruction of the microbiome of the model sponge Ianthella basta

Project description:Marine sponges are essential for coral reefs to thrive and harbour a diverse microbiome that is thought to contribute to host health. Although the overall function of sponge symbionts has been increasingly described, in-depth characterisation of each taxa remains challenging, with many sponge species hosting up to 3,000 distinct microbial species. Recently, the sponge Ianthella basta has emerged as a model organism for symbiosis research, hosting only three dominant symbionts: a Thaumarchaeotum, a Gammaproteobacterium, and an Alphaproteobacterium and a range of other minor taxa. Here, we retrieved metagenome assembled genomes (MAGs) for >90% of I. basta’s microbial community which allowed us to make a complete metabolic reconstruction of the sponge’s microbiome, identifying metabolic complementarity between microbes, as well as the importance of symbionts present in low abundance. We also mined the metagenomes for putative viral sequences, highlighting the contribution of viruses to the overall metabolism of the sponge, and complement this data with metaproteomic sequencing to identify active metabolic pathways in both prokaryotes and viruses. This data now allows us to use I. basta as a model organism for studying host-microbe interactions and provides a basis for future (genomic) manipulative experiments.

2023-02-24 | PXD032278 | Pride

Transcription profiling of host response to root-knot nematode infection in Arabidopsis

Project description:During a compatible interaction, root-knot nematodes (Meloidogyne spp.) induce the redifferentiation of root cells into multinucleate nematode feeding cells giant cells. These hypertrophied cells result from repeated nuclear divisions without cytokinesis, are metabolically active and present features typical of transfer cells. Hyperplasia of the surrounding cells leads to formation of the typical root gall. We investigate here the plant response to root-knot nematodes.

2005-01-11 | E-MEXP-233 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data